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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0308300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.37 (0.0341) R2 : 0.622
β1 : 2.8 (0.125) R2dD : 0.432 R2D : 0.315
β2 : 1.15 (0.0882) R2dC : 0.141 R2C : 0.123
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.857 (0.0729) R2dN8 : 0.154 R2N8 : 0.0394
σ : 0.642
deviance : 187.85
__
_____
C
peak time of C : 4.75
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
167.99 0.609 4.32 2.49 1.13 0.896 0.235 2.84 0.938 4.77 0.1954 4563 -- --
173.65 0.614 4.36 2.55 1.14 0.884 0.3 -- 0.913 4.8 0.5 4398 -- --
168.13 0.604 4.32 2.49 1.14 0.9 -- 2.85 0.937 4.77 0.2146 4563 -- --
173.71 0.614 4.36 2.54 1.14 0.899 -- -- 0.911 4.79 0.9052 4194 -- --
236.27 0.716 4.33 2.52 -- 0.893 -- 3.18 0.966 -- 0.2363 4529 -- --
187.38 0.642 4.37 2.8 1.14 -- 0.421 -- 0.859 4.76 -- -- -- --
187.85 0.642 4.37 2.8 1.15 -- -- -- 0.857 4.75 -- -- -- --
241.67 0.724 4.37 2.58 -- 0.958 -- -- 0.941 -- 0.9059 3733 -- --
231.26 0.708 4.35 -- 1.03 1.69 -- -- 0.847 5.51 1.003 47520 -- --
257.58 0.75 4.39 2.85 -- -- -- -- 0.887 -- -- -- -- --
394.79 0.929 4.44 -- 1.2 -- -- -- 0.545 4.69 -- -- -- --
302.46 0.81 4.36 -- -- 1.8 -- -- 0.987 -- 1.123 47520 -- --
471.13 1.01 4.46 -- -- -- -- -- 0.571 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 159.99 humidity 90.0 14400 > th dose independent rect. 19 6
21 161.15 humidity 90.0 14400 < th dose independent rect. 19 5
29 161.33 humidity 90.0 14400 < th dose independent rect. 20 3
30 161.36 humidity 90.0 14400 > th dose independent sin 16 NA
57 161.80 humidity 80.0 14400 < th dose independent rect. 16 1
61 161.89 humidity 90.0 14400 > th dose independent rect. 17 17
66 161.95 humidity 90.0 14400 > th dose dependent rect. 19 7
67 161.96 humidity 80.0 14400 < th dose independent rect. 13 5
74 162.01 humidity 80.0 14400 > th dose independent rect. 16 2
78 162.07 humidity 80.0 14400 > th dose independent rect. 10 1
82 162.11 humidity 90.0 14400 > th dose independent rect. 7 19
84 162.12 humidity 80.0 14400 > th dose independent rect. 9 10
85 162.13 humidity 80.0 14400 > th dose independent rect. 13 6
95 162.17 humidity 80.0 43200 > th dose independent rect. 4 3
104 162.20 humidity 80.0 14400 > th dose dependent rect. 18 1
110 162.22 wind 1.0 43200 > th dose dependent rect. 6 1
111 162.22 humidity 80.0 14400 > th dose dependent rect. 17 3
112 162.23 wind 3.0 43200 < th dose independent rect. 5 2
135 162.34 humidity 90.0 14400 > th dose independent rect. 9 17
145 162.38 precipitation 0.1 14400 < th dose independent rect. 13 15
146 162.38 precipitation 0.1 14400 < th dose dependent rect. 13 15
148 162.40 precipitation 0.1 14400 > th dose independent rect. 13 15
150 162.40 wind 9.0 43200 < th dose dependent rect. 6 1
152 162.43 wind 3.0 43200 > th dose independent rect. 5 2
168 162.48 precipitation 0.1 14400 > th dose independent rect. 15 13
169 162.48 precipitation 0.1 14400 < th dose independent rect. 15 13
170 162.48 precipitation 0.1 14400 < th dose independent rect. 11 17
174 162.48 precipitation 0.1 14400 < th dose dependent rect. 15 13
175 162.48 precipitation 0.1 14400 < th dose dependent rect. 11 17
176 162.49 precipitation 0.1 14400 > th dose independent rect. 11 17
200 162.54 humidity 80.0 14400 < th dose independent rect. 10 9
208 162.56 humidity 80.0 14400 > th dose dependent rect. 16 6
221 162.58 humidity 80.0 14400 > th dose dependent rect. 9 14
273 162.69 precipitation 0.1 14400 < th dose independent sin 16 NA
278 162.69 precipitation 0.1 14400 < th dose dependent sin 16 NA
281 162.70 precipitation 0.1 14400 > th dose independent sin 16 NA
289 162.71 humidity 90.0 14400 < th dose independent rect. 7 19
299 162.72 humidity 80.0 14400 > th dose dependent rect. 14 9
324 162.77 humidity 90.0 14400 > th dose dependent sin 15 NA
366 162.84 humidity 90.0 14400 > th dose independent rect. 1 22
378 162.86 humidity 90.0 14400 < th dose independent sin 17 NA
414 162.95 humidity 90.0 14400 < th dose independent rect. 17 17
434 162.98 humidity 90.0 14400 > th dose dependent rect. 7 1
435 162.98 humidity 90.0 14400 > th dose dependent rect. 6 4
456 163.02 wind 3.0 43200 < th dose dependent rect. 3 10
461 163.04 humidity 90.0 14400 > th dose independent no NA NA
467 163.04 humidity 90.0 14400 > th dose dependent rect. 6 20
490 163.07 humidity 90.0 14400 > th dose independent rect. 9 23
491 163.07 humidity 80.0 14400 > th dose dependent sin 20 NA
497 163.08 humidity 80.0 43200 < th dose independent rect. 3 4
570 163.20 humidity 90.0 14400 > th dose dependent rect. 3 20
578 163.21 humidity 90.0 14400 > th dose dependent rect. 15 19
618 163.27 wind 1.0 43200 > th dose independent rect. 1 1
623 163.27 wind 3.0 43200 < th dose dependent rect. 1 11
685 163.35 precipitation 0.1 14400 > th dose dependent rect. 13 15
697 163.37 humidity 80.0 14400 > th dose independent rect. 14 1
726 163.42 precipitation 0.1 14400 > th dose independent rect. 16 1
727 163.42 precipitation 0.1 14400 < th dose independent rect. 16 1
733 163.42 precipitation 0.1 14400 < th dose dependent rect. 16 1
745 163.43 humidity 90.0 14400 < th dose independent rect. 1 22
756 163.44 precipitation 0.1 14400 > th dose dependent rect. 13 1
758 163.45 humidity 80.0 14400 < th dose independent rect. 10 1
789 163.50 precipitation 0.1 14400 < th dose independent rect. 16 5
790 163.50 humidity 80.0 14400 > th dose independent rect. 8 7
794 163.50 precipitation 0.1 14400 < th dose dependent rect. 16 5
821 163.52 precipitation 0.1 14400 > th dose independent rect. 16 5
832 163.54 humidity 80.0 43200 < th dose independent rect. 23 9
852 163.57 humidity 80.0 43200 < th dose independent rect. 3 1
886 163.60 radiation 1.0 14400 < th dose dependent rect. 7 1
915 163.63 wind 3.0 43200 < th dose dependent rect. 24 7
919 163.63 precipitation 0.1 14400 > th dose dependent rect. 16 12