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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0308200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.3 (0.0225) R2 : 0.0264
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.167 (0.0474) R2dN8 : 0.0341 R2N8 : 0.0264
σ : 0.424
deviance : 82.51
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
71.5 0.397 3.32 0.177 0.309 -0.365 0.295 1.69 0.18 21.4 1 16 -- --
73.83 0.403 3.3 0.251 0.298 -0.195 0.246 -- 0.204 21.4 1.131 13 -- --
71.81 0.395 3.32 0.169 0.306 -0.356 -- 1.65 0.179 21.5 1.061 16 -- --
74.03 0.403 3.3 0.242 0.295 -0.186 -- -- 0.203 21.7 1.107 13 -- --
77.32 0.41 3.31 0.178 -- -0.325 -- 1.55 0.18 -- 1.065 16 -- --
75.19 0.407 3.31 0.27 0.296 -- 0.16 -- 0.196 22.4 -- -- -- --
75.29 0.406 3.31 0.263 0.294 -- -- -- 0.195 22.6 -- -- -- --
79.13 0.414 3.29 0.255 -- -0.211 -- -- 0.212 -- 1.2 9 -- --
75.53 0.405 3.31 -- 0.299 -0.245 -- -- 0.176 21.6 1.199 13 -- --
80.6 0.42 3.3 0.269 -- -- -- -- 0.196 -- -- -- -- --
77.12 0.411 3.31 -- 0.296 -- -- -- 0.166 22.6 -- -- -- --
80.66 0.418 3.3 -- -- -0.237 -- -- 0.184 -- 1.1 9 -- --
82.51 0.424 3.3 -- -- -- -- -- 0.167 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 62.30 temperature 25.0 30 < th dose independent rect. 2 1
2 62.32 wind 3.0 30 < th dose independent rect. 2 1
3 62.33 humidity 90.0 30 > th dose independent rect. 2 1
4 62.33 wind 3.0 30 < th dose dependent rect. 2 1
5 62.33 temperature 20.0 10 > th dose dependent rect. 2 1
7 62.34 humidity 80.0 30 > th dose dependent rect. 2 1
10 62.36 temperature 20.0 30 > th dose independent rect. 2 1
17 62.38 humidity 50.0 30 > th dose dependent rect. 2 1
19 62.38 atmosphere 1005.0 30 > th dose dependent rect. 2 1
21 62.40 atmosphere 1015.0 30 < th dose dependent rect. 2 1
26 62.41 temperature 10.0 30 > th dose independent rect. 2 1
29 62.41 humidity 50.0 30 > th dose independent rect. 2 1
32 62.41 atmosphere 995.0 30 > th dose independent rect. 2 1
33 62.41 atmosphere 1010.0 30 < th dose independent rect. 2 1
35 62.41 radiation 1.0 30 < th dose independent rect. 2 1
40 62.41 precipitation 0.1 30 < th dose independent rect. 2 1
41 62.41 temperature 10.0 30 > th dose independent rect. 3 23
43 62.41 radiation 1.0 30 < th dose dependent rect. 2 1
48 62.41 precipitation 0.1 30 < th dose dependent rect. 2 1
51 62.45 atmosphere 1005.0 30 > th dose independent rect. 2 1
52 62.45 atmosphere 995.0 30 > th dose dependent rect. 2 1
63 62.57 temperature 30.0 30 < th dose dependent rect. 2 1
67 62.63 wind 1.0 30 > th dose independent rect. 2 1
93 62.70 wind 9.0 30 < th dose independent rect. 3 23
109 64.47 precipitation 0.1 30 < th dose independent rect. 3 23
110 64.47 precipitation 0.1 30 < th dose dependent rect. 3 23
111 64.50 atmosphere 995.0 30 > th dose independent rect. 3 23
134 66.30 wind 3.0 30 < th dose dependent rect. 24 3
135 66.31 temperature 25.0 270 > th dose independent rect. 23 4
136 66.35 radiation 10.0 43200 < th dose dependent rect. 3 1
137 66.36 wind 9.0 1440 < th dose independent rect. 3 1
138 66.36 temperature 10.0 1440 > th dose independent rect. 3 1
141 66.36 temperature 30.0 1440 < th dose independent rect. 3 1
145 66.36 humidity 50.0 1440 > th dose independent rect. 3 1
154 66.36 atmosphere 995.0 1440 > th dose independent rect. 3 1
155 66.36 radiation 1.0 1440 < th dose independent rect. 3 1
175 66.36 temperature 10.0 1440 > th dose independent rect. 4 23
178 66.36 radiation 1.0 1440 < th dose dependent rect. 3 1
207 66.98 temperature 25.0 270 > th dose dependent rect. 23 4
241 67.59 humidity 50.0 30 > th dose independent rect. 3 23
253 68.01 humidity 90.0 90 < th dose independent rect. 2 1
285 68.21 temperature 10.0 90 > th dose dependent rect. 17 10
298 68.38 wind 1.0 10 < th dose independent rect. 15 12
326 68.89 temperature 25.0 270 > th dose independent rect. 15 12
332 68.94 temperature 20.0 90 > th dose independent rect. 17 10
358 69.18 wind 1.0 10 < th dose independent rect. 8 19
373 69.29 temperature 25.0 720 > th dose independent rect. 15 3
389 69.40 wind 1.0 720 > th dose independent rect. 10 5
394 69.43 radiation 20.0 720 > th dose independent rect. 15 1
397 69.44 atmosphere 1015.0 30 < th dose independent rect. 3 23
436 69.58 precipitation 0.1 720 < th dose independent rect. 15 12
437 69.58 precipitation 0.1 720 < th dose dependent rect. 15 12
474 69.89 temperature 25.0 270 < th dose independent rect. 17 12
495 69.99 wind 9.0 720 < th dose independent rect. 15 12
496 69.99 atmosphere 995.0 720 > th dose independent rect. 3 12
504 70.01 wind 1.0 10 > th dose independent sin 16 NA
505 70.01 humidity 90.0 90 < th dose independent rect. 1 4
517 70.10 radiation 40.0 720 < th dose independent rect. 15 12
536 70.16 atmosphere 1015.0 720 < th dose independent rect. 3 12
546 70.21 radiation 1.0 720 > th dose independent rect. 15 3
553 70.23 wind 1.0 30 > th dose dependent rect. 2 1
554 70.24 temperature 25.0 270 > th dose independent sin 12 NA
558 70.25 temperature 10.0 720 > th dose independent rect. 3 12
559 70.25 temperature 10.0 720 > th dose independent rect. 15 12
574 70.30 precipitation 0.1 720 < th dose independent rect. 15 4
576 70.30 precipitation 0.1 720 < th dose dependent rect. 15 4
628 70.45 temperature 25.0 270 < th dose independent sin 13 NA
651 70.48 wind 3.0 10 < th dose dependent rect. 21 6
654 70.49 temperature 20.0 30 > th dose independent rect. 7 20
660 70.51 temperature 15.0 720 > th dose dependent rect. 15 1
669 70.53 wind 3.0 10 < th dose dependent rect. 18 9
672 70.54 radiation 1.0 720 > th dose dependent rect. 15 2
677 70.55 wind 9.0 720 < th dose independent rect. 3 12
693 70.58 wind 3.0 10 < th dose dependent rect. 16 11
709 70.64 precipitation 0.1 720 < th dose independent rect. 7 20
713 70.64 precipitation 0.1 720 < th dose dependent rect. 7 20
720 70.66 precipitation 0.1 720 < th dose independent rect. 15 20
722 70.66 precipitation 0.1 720 < th dose dependent rect. 15 20
723 70.67 atmosphere 1015.0 1440 < th dose independent rect. 3 1
767 70.79 wind 5.0 90 < th dose independent rect. 15 12
768 70.79 radiation 40.0 90 < th dose dependent rect. 15 12
802 70.88 atmosphere 995.0 90 > th dose independent rect. 3 14
810 70.89 atmosphere 1015.0 90 < th dose independent rect. 17 10
811 70.89 precipitation 0.1 720 < th dose independent rect. 3 12
813 70.89 precipitation 0.1 720 < th dose dependent rect. 3 12
829 70.93 wind 9.0 720 < th dose independent rect. 15 10
834 70.94 temperature 30.0 30 < th dose independent rect. 3 23
838 70.95 wind 9.0 720 < th dose independent rect. 13 14
850 70.97 temperature 10.0 720 > th dose dependent rect. 3 3
859 70.99 atmosphere 995.0 720 > th dose independent rect. 11 4
865 71.00 radiation 40.0 720 < th dose independent rect. 15 10
896 71.03 atmosphere 1015.0 720 < th dose independent rect. 1 14
937 71.06 wind 9.0 720 < th dose independent rect. 15 20
939 71.07 atmosphere 1015.0 720 < th dose independent rect. 3 10
940 71.07 atmosphere 995.0 720 > th dose independent rect. 1 14
950 71.08 radiation 40.0 90 < th dose dependent rect. 13 14
954 71.09 wind 1.0 720 > th dose independent rect. 15 4
957 71.09 temperature 20.0 30 > th dose independent rect. 9 18
960 71.09 radiation 1.0 720 > th dose dependent rect. 15 14
963 71.10 atmosphere 995.0 720 > th dose independent rect. 19 20
971 71.10 wind 9.0 30 < th dose dependent rect. 17 10
999 71.13 wind 5.0 90 < th dose independent rect. 17 10