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Os01g0305900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to A-type R2R3 Myb protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0408) R2 : 0.58
β1 : -1.87 (0.15) R2dD : 0.151 R2D : 0.13
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.59 (0.136) R2dE : 0.135 R2E : 0.105
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.25 (0.0885) R2dN8 : 0.258 R2N8 : 0.324
σ : 0.76
deviance : 266.22
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 75
memory length : 1224
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
243.27 0.733 10.6 -1.58 1.26 -1.53 2.62 -0.503 1.37 6.04 83.02 732 -- --
243.79 0.727 10.6 -1.61 1.26 -1.53 2.46 -- 1.38 6.01 83 735 -- --
257.2 0.747 10.6 -1.68 1.28 -1.62 -- 0.549 1.37 6.25 82.55 767 -- --
257.76 0.748 10.6 -1.63 1.24 -1.63 -- -- 1.37 6.29 82.36 786 -- --
267.12 0.761 10.6 -1.95 -- -1.63 -- 0.699 1.22 -- 74.96 1227 -- --
304.57 0.818 10.6 -1.62 0.765 -- 1.86 -- 1.45 3.95 -- -- -- --
313.47 0.829 10.6 -1.65 0.776 -- -- -- 1.44 3.26 -- -- -- --
266.22 0.76 10.6 -1.87 -- -1.59 -- -- 1.25 -- 75 1224 -- --
324.08 0.838 10.5 -- 1.27 -1.56 -- -- 1.5 6.3 84 726 -- --
347.55 0.871 10.6 -1.62 -- -- -- -- 1.46 -- -- -- -- --
385.13 0.918 10.5 -- 0.743 -- -- -- 1.63 3.26 -- -- -- --
350.56 0.872 10.6 -- -- -1.91 -- -- 1.51 -- 83.55 1208 -- --
416.43 0.952 10.5 -- -- -- -- -- 1.64 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 239.66 humidity 80 720 < th dose independent rect. 10 11
6 240.91 humidity 90 720 > th dose dependent rect. 20 1
9 241.29 humidity 70 720 > th dose dependent rect. 11 14
17 241.93 humidity 80 720 < th dose independent sin 20 NA
19 242.04 humidity 80 720 < th dose independent rect. 5 16
22 242.35 humidity 70 720 > th dose dependent rect. 5 21
25 242.48 humidity 80 720 > th dose independent rect. 4 18
46 243.16 humidity 80 720 > th dose independent rect. 5 21
52 243.31 radiation 1 1440 > th dose independent rect. 11 1
59 243.54 humidity 80 720 > th dose independent rect. 11 21
66 243.84 humidity 70 720 > th dose dependent sin 18 NA
80 244.33 humidity 80 1440 < th dose independent rect. 6 9
83 244.37 radiation 1 720 < th dose dependent rect. 9 8
97 244.70 humidity 80 1440 > th dose independent rect. 2 14
98 244.72 humidity 80 1440 > th dose independent rect. 5 11
118 245.00 humidity 90 720 > th dose dependent rect. 18 5
120 245.03 humidity 80 720 > th dose independent sin 20 NA
129 245.12 humidity 80 720 > th dose independent rect. 10 16
139 245.21 humidity 80 720 > th dose independent rect. 11 11
153 245.43 humidity 70 720 > th dose dependent rect. 11 21
175 245.67 humidity 80 720 > th dose independent rect. 23 23
235 246.35 humidity 80 720 > th dose independent rect. 1 23
308 247.03 humidity 80 720 < th dose independent rect. 9 23
367 247.61 radiation 1 1440 < th dose independent rect. 9 3
369 247.61 radiation 1 1440 < th dose dependent rect. 9 3
380 247.72 humidity 80 720 > th dose independent no NA NA
414 248.04 humidity 80 1440 < th dose independent sin 3 NA
430 248.21 humidity 90 720 < th dose dependent rect. 17 21
443 248.32 radiation 1 1440 < th dose independent rect. 11 1
445 248.32 radiation 1 1440 < th dose dependent rect. 11 1
466 248.55 humidity 90 720 < th dose dependent rect. 15 22
468 248.57 humidity 80 1440 > th dose independent sin 2 NA
509 248.86 humidity 80 720 < th dose independent no NA NA
512 248.88 humidity 90 720 < th dose dependent rect. 9 22
519 249.00 humidity 80 720 > th dose independent rect. 20 23
557 249.22 humidity 80 720 < th dose independent rect. 15 23
559 249.25 humidity 90 720 < th dose dependent rect. 13 23
571 249.34 humidity 90 720 < th dose dependent rect. 17 15
604 249.58 humidity 80 720 < th dose independent rect. 17 23
611 249.66 humidity 80 1440 > th dose independent rect. 11 3
612 249.66 humidity 60 14400 > th dose independent rect. 3 5
621 249.70 humidity 70 720 > th dose dependent no NA NA
632 249.76 temperature 20 720 > th dose independent rect. 21 11
636 249.82 humidity 80 1440 < th dose independent rect. 11 3
637 249.82 humidity 80 720 > th dose independent rect. 17 23
646 249.86 humidity 70 1440 > th dose dependent rect. 11 3
648 249.89 humidity 90 720 < th dose dependent sin 15 NA
682 250.10 humidity 80 720 < th dose independent rect. 15 6
708 250.25 humidity 80 720 < th dose independent rect. 13 23
728 250.41 humidity 90 720 < th dose dependent rect. 15 19
737 250.45 humidity 90 720 < th dose dependent rect. 1 23
744 250.52 humidity 90 720 < th dose dependent no NA NA
758 250.59 humidity 90 720 < th dose dependent rect. 5 23
766 250.65 humidity 90 720 < th dose dependent rect. 15 17
780 250.73 humidity 70 1440 > th dose independent rect. 11 1
786 250.75 atmosphere 995 43200 < th dose dependent sin 16 NA
794 250.82 humidity 70 14400 < th dose dependent rect. 21 1
803 250.82 humidity 70 720 > th dose dependent rect. 18 23
831 250.99 atmosphere 995 43200 > th dose independent rect. 18 21
889 251.34 wind 1 14400 > th dose independent rect. 1 1
907 251.44 atmosphere 995 43200 < th dose dependent rect. 13 13
914 251.50 humidity 90 1440 < th dose dependent rect. 2 14
915 251.51 humidity 60 14400 < th dose independent rect. 6 1
917 251.51 humidity 60 14400 < th dose independent rect. 20 1
919 251.51 radiation 20 14400 > th dose independent rect. 17 1
974 251.51 humidity 60 14400 < th dose dependent rect. 6 1
978 251.51 radiation 20 14400 > th dose dependent rect. 17 1