FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0304100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.24 (0.0348) R2 : 0.626
β1 : 2.89 (0.131) R2dD : 0.44 R2D : 0.491
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.13 (0.107) R2dE : 0.099 R2E : 0.195
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.385 (0.0746) R2dN8 : 0.0297 R2N8 : -0.00921
σ : 0.65
deviance : 194.65
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.62
memory length : 1163
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
188.78 0.646 5.34 1.97 0.0351 1.5 -0.931 -4.02 0.246 19.2 26.42 1194 -- --
193.41 0.648 5.28 2.8 0.0366 1.29 -1.36 -- 0.192 19.2 23.93 1132 -- --
189.85 0.642 5.34 2.07 0.143 1.42 -- -3.48 0.207 0.0222 25.91 1206 -- --
193.37 0.648 5.23 2.87 0.154 1.07 -- -- 0.391 23.8 25.7 1220 -- --
190.83 0.643 5.33 2.07 -- 1.49 -- -3.51 0.205 -- 25.74 1162 -- --
235.04 0.719 5.22 3.22 0.35 -- -0.0806 -- 0.468 0.377 -- -- -- --
235.07 0.718 5.22 3.23 0.351 -- -- -- 0.469 0.497 -- -- -- --
194.65 0.65 5.24 2.89 -- 1.13 -- -- 0.385 -- 25.62 1163 -- --
394.59 0.925 5.35 -- 0.191 1.71 -- -- -0.144 22.8 23.35 1329 -- --
242.78 0.728 5.22 3.24 -- -- -- -- 0.475 -- -- -- -- --
509.32 1.06 5.3 -- 0.401 -- -- -- 0.109 0.899 -- -- -- --
216.17 0.685 5.49 -- -- 2.7 -- -- -0.754 -- 15.69 47520 -- --
519.34 1.06 5.3 -- -- -- -- -- 0.115 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 187.74 radiation 1.0 43200 < th dose dependent rect. 6 1
2 188.35 wind 7.0 43200 > th dose dependent rect. 12 1
3 188.59 temperature 25.0 720 > th dose dependent rect. 17 16
6 189.26 radiation 1.0 43200 < th dose independent rect. 9 3
7 189.32 radiation 1.0 43200 > th dose independent rect. 9 3
8 189.38 wind 7.0 43200 > th dose independent rect. 12 1
9 189.49 radiation 1.0 43200 < th dose dependent rect. 6 8
13 189.59 wind 9.0 43200 > th dose independent rect. 14 6
14 189.59 wind 9.0 43200 > th dose independent rect. 11 12
15 189.63 radiation 1.0 43200 < th dose dependent rect. 6 11
17 189.69 temperature 25.0 720 > th dose dependent sin 11 NA
19 189.72 wind 9.0 43200 < th dose independent rect. 11 12
21 189.75 humidity 90.0 43200 > th dose independent rect. 3 3
26 189.88 wind 1.0 43200 < th dose dependent rect. 7 1
33 190.13 wind 9.0 43200 < th dose independent rect. 14 5
35 190.14 wind 9.0 43200 < th dose independent rect. 11 9
38 190.18 wind 9.0 43200 > th dose independent rect. 11 9
39 190.18 radiation 1.0 43200 < th dose dependent rect. 10 2
41 190.22 radiation 40.0 14400 > th dose independent rect. 15 1
57 190.22 radiation 1.0 43200 < th dose dependent rect. 9 4
58 190.24 wind 9.0 43200 > th dose independent rect. 14 8
64 190.39 wind 9.0 43200 > th dose dependent rect. 11 12
73 190.57 wind 7.0 43200 > th dose dependent rect. 11 7
81 190.81 wind 9.0 43200 > th dose independent rect. 11 15
82 190.81 wind 9.0 43200 > th dose dependent rect. 14 6
83 190.84 wind 7.0 43200 < th dose independent rect. 12 2
88 190.88 radiation 1.0 43200 > th dose independent rect. 6 8
89 190.88 radiation 1.0 43200 < th dose independent rect. 6 8
91 190.88 radiation 1.0 43200 < th dose dependent rect. 8 6
99 191.08 wind 9.0 43200 > th dose dependent rect. 11 9
102 191.11 wind 9.0 43200 < th dose independent rect. 14 8
106 191.21 wind 9.0 43200 > th dose dependent rect. 14 8
111 191.28 radiation 1.0 43200 < th dose independent rect. 8 9
112 191.32 radiation 1.0 43200 > th dose independent rect. 8 9
115 191.33 wind 9.0 43200 < th dose independent rect. 11 15
120 191.37 precipitation 0.1 43200 > th dose independent rect. 9 1
122 191.37 precipitation 0.1 43200 > th dose dependent rect. 9 1
124 191.38 temperature 25.0 720 > th dose dependent rect. 17 7
130 191.41 humidity 90.0 43200 > th dose dependent rect. 10 1
132 191.42 precipitation 0.1 43200 < th dose independent rect. 9 1
133 191.42 precipitation 0.1 43200 < th dose dependent rect. 9 1
156 191.59 wind 1.0 43200 < th dose dependent rect. 16 3
186 192.02 radiation 40.0 14400 > th dose dependent rect. 15 1
222 192.26 radiation 1.0 43200 < th dose independent rect. 6 1
224 192.28 radiation 1.0 43200 > th dose independent rect. 6 1
244 192.49 temperature 20.0 43200 < th dose dependent rect. 2 1
251 192.54 temperature 20.0 43200 > th dose independent rect. 6 1
253 192.56 humidity 90.0 43200 > th dose dependent rect. 23 1
254 192.57 temperature 25.0 43200 > th dose independent rect. 18 1
263 192.63 wind 1.0 43200 < th dose independent rect. 16 3
264 192.65 temperature 25.0 43200 < th dose independent rect. 18 1
271 192.72 temperature 20.0 43200 < th dose independent rect. 4 1
282 192.79 temperature 20.0 43200 < th dose dependent rect. 2 9
283 192.79 temperature 20.0 43200 < th dose dependent rect. 24 11
286 192.81 humidity 90.0 43200 < th dose independent rect. 21 8
290 192.82 temperature 20.0 43200 > th dose independent rect. 4 1
297 192.84 temperature 20.0 43200 < th dose independent rect. 6 1
298 192.84 temperature 25.0 1440 > th dose dependent rect. 16 1
324 192.91 temperature 25.0 1440 > th dose dependent rect. 13 11
339 192.95 humidity 90.0 43200 > th dose independent rect. 10 1
341 192.95 temperature 20.0 43200 < th dose dependent sin 5 NA
354 192.97 wind 1.0 43200 > th dose independent rect. 16 3
396 193.05 temperature 25.0 1440 > th dose dependent rect. 13 19
398 193.06 temperature 20.0 43200 < th dose independent rect. 1 2
410 193.08 temperature 20.0 43200 < th dose independent rect. 1 4
428 193.10 humidity 90.0 43200 > th dose dependent rect. 4 1
443 193.14 temperature 20.0 43200 > th dose independent rect. 2 1
447 193.15 temperature 20.0 43200 > th dose independent rect. 2 5
488 193.23 temperature 25.0 43200 > th dose dependent rect. 17 2
550 193.34 temperature 20.0 43200 < th dose dependent rect. 6 2
560 193.35 humidity 90.0 43200 > th dose dependent rect. 2 1
593 193.40 temperature 30.0 43200 < th dose independent rect. 15 1
606 193.41 radiation 1.0 43200 < th dose dependent rect. 22 19
626 193.44 temperature 30.0 43200 > th dose independent rect. 15 1
635 193.46 humidity 90.0 43200 > th dose dependent rect. 2 3
676 193.53 temperature 30.0 43200 < th dose independent rect. 13 1
698 193.56 temperature 30.0 43200 < th dose independent rect. 13 3
715 193.58 temperature 30.0 1440 < th dose independent rect. 11 3
729 193.59 humidity 90.0 43200 > th dose dependent rect. 22 7
770 193.65 temperature 30.0 43200 < th dose independent rect. 13 12
771 193.65 temperature 30.0 43200 < th dose independent rect. 13 15
773 193.65 temperature 20.0 43200 < th dose dependent no NA NA
779 193.66 temperature 30.0 43200 < th dose independent rect. 13 6
792 193.66 temperature 20.0 43200 > th dose dependent rect. 3 1
806 193.67 temperature 20.0 43200 < th dose dependent rect. 8 23
894 193.76 temperature 30.0 43200 > th dose independent rect. 13 3
926 193.78 temperature 20.0 43200 < th dose dependent rect. 4 23
931 193.79 radiation 1.0 43200 < th dose dependent sin 2 NA
936 193.80 temperature 20.0 43200 < th dose independent rect. 22 1
960 193.82 temperature 30.0 43200 > th dose independent rect. 13 6
985 193.83 temperature 30.0 43200 > th dose independent rect. 13 1
991 193.83 radiation 1.0 43200 < th dose dependent rect. 6 17