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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0303100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chitinase precursor (EC 3.2.1.17).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.55 (0.0272) R2 : 0.567
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.94 (0.0931) R2dE : 0.41 R2E : 0.31
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.803 (0.0574) R2dN8 : 0.257 R2N8 : 0.157
σ : 0.511
deviance : 120.5
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 31.3
memory length : 277
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15.5
open length of G : 21.5

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
109.25 0.491 3.54 0.382 0.316 -1.9 -0.0478 -2.64 0.83 5.65 31.3 287 15.8 20.7
113.24 0.496 3.53 0.297 0.302 -2.08 -1.27 -- 0.825 5.16 31.2 293 15.7 21
109.23 0.487 3.54 0.379 0.313 -1.9 -- -2.67 0.83 5.71 31.3 288 15.8 20.7
116.85 0.503 3.53 0.264 0.286 -2.14 -- -- 0.847 5.97 31.2 292 15.7 21.2
111.2 0.491 3.53 0.401 -- -1.68 -- -2.84 0.856 -- 31.24 273 15.7 21.1
184.08 0.636 3.58 0.405 0.837 -- 1.85 -- 0.793 17.2 -- -- -- --
192.69 0.65 3.57 0.405 0.848 -- -- -- 0.801 17.2 -- -- -- --
118.91 0.508 3.53 0.273 -- -1.91 -- -- 0.863 -- 31.2 278 15.5 21.5
118.2 0.506 3.54 -- 0.293 -2.13 -- -- 0.815 6.04 31.27 292 15.7 21.2
230.37 0.709 3.56 0.375 -- -- -- -- 0.78 -- -- -- -- --
197.02 0.657 3.58 -- 0.841 -- -- -- 0.756 17.2 -- -- -- --
120.5 0.511 3.55 -- -- -1.94 -- -- 0.803 -- 31.3 277 15.5 21.5
234.09 0.714 3.57 -- -- -- -- -- 0.738 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 110.55 temperature 15.0 90 > th dose dependent rect. 13 6
4 112.53 temperature 15.0 270 > th dose dependent rect. 13 3
9 114.58 atmosphere 1015.0 90 < th dose dependent rect. 13 6
14 115.54 temperature 30.0 270 < th dose independent rect. 16 20
23 117.92 temperature 30.0 270 < th dose independent rect. 7 15
26 118.26 atmosphere 1015.0 270 < th dose dependent rect. 13 3
51 120.94 humidity 90.0 270 < th dose dependent rect. 12 5
55 121.18 radiation 1.0 90 > th dose independent rect. 13 6
67 121.29 temperature 25.0 90 > th dose dependent rect. 13 10
78 121.93 precipitation 0.1 90 < th dose independent rect. 13 6
79 121.93 humidity 90.0 270 < th dose dependent rect. 13 3
80 121.93 precipitation 0.1 90 < th dose dependent rect. 13 6
81 122.00 temperature 25.0 90 > th dose dependent rect. 13 13
86 122.12 temperature 10.0 270 > th dose dependent rect. 12 14
102 122.29 atmosphere 995.0 270 > th dose independent rect. 16 21
107 122.39 temperature 25.0 90 > th dose dependent rect. 13 20
118 123.06 humidity 90.0 90 < th dose independent rect. 13 6
127 123.47 temperature 25.0 90 > th dose independent rect. 13 6
134 123.80 humidity 50.0 270 > th dose independent rect. 16 20
138 123.90 temperature 30.0 270 > th dose independent rect. 13 3
146 124.18 radiation 1.0 270 > th dose independent rect. 11 20
162 124.89 temperature 10.0 90 > th dose dependent rect. 13 20
164 124.97 wind 9.0 270 < th dose independent rect. 13 3
167 125.02 precipitation 0.1 270 < th dose independent rect. 13 3
168 125.02 precipitation 0.1 270 < th dose dependent rect. 13 3
169 125.03 wind 1.0 270 > th dose independent rect. 13 3
170 125.03 humidity 90.0 270 < th dose independent rect. 13 3
172 125.11 temperature 20.0 270 > th dose independent rect. 13 3
174 125.16 temperature 10.0 270 > th dose independent rect. 13 3
176 125.16 atmosphere 1010.0 270 < th dose independent rect. 13 3
178 125.16 temperature 10.0 270 > th dose independent rect. 16 21
184 125.28 radiation 1.0 270 > th dose independent rect. 13 3
192 125.56 atmosphere 995.0 270 > th dose independent rect. 17 19
197 125.67 radiation 1.0 90 > th dose independent sin 15 NA
198 125.71 radiation 1.0 90 < th dose independent sin 15 NA
220 126.02 wind 9.0 270 < th dose independent rect. 16 21
222 126.04 wind 9.0 90 < th dose independent rect. 13 6
223 126.06 temperature 10.0 90 > th dose independent rect. 13 6
225 126.06 atmosphere 1010.0 90 < th dose independent rect. 13 6
227 126.06 temperature 10.0 90 > th dose independent rect. 19 18
228 126.06 atmosphere 995.0 90 > th dose independent rect. 19 18
230 126.07 wind 1.0 90 > th dose independent rect. 13 6
245 126.33 wind 9.0 90 < th dose independent rect. 19 18
253 126.55 radiation 1.0 90 < th dose dependent sin 15 NA
276 126.83 humidity 90.0 90 < th dose dependent rect. 13 20
334 127.82 temperature 10.0 270 > th dose independent rect. 17 19
335 127.82 temperature 10.0 270 > th dose dependent rect. 11 21
352 127.99 humidity 70.0 270 < th dose independent rect. 12 6
371 128.18 wind 9.0 270 < th dose independent rect. 17 19
386 128.33 radiation 40.0 90 < th dose independent rect. 13 6
421 128.83 humidity 60.0 270 > th dose independent rect. 8 14
434 129.00 humidity 80.0 90 < th dose dependent rect. 13 14
436 129.01 humidity 90.0 90 < th dose dependent rect. 13 12
563 130.05 temperature 10.0 1440 > th dose independent rect. 14 6
566 130.05 temperature 10.0 1440 > th dose independent rect. 20 18
569 130.05 atmosphere 995.0 1440 > th dose independent rect. 20 18
572 130.09 humidity 90.0 10 < th dose dependent rect. 15 5
614 130.33 precipitation 0.1 90 < th dose independent rect. 19 18
615 130.33 precipitation 0.1 90 < th dose dependent rect. 19 18
647 130.52 radiation 1.0 270 > th dose dependent rect. 13 18
761 131.28 radiation 40.0 270 < th dose dependent sin 15 NA
781 131.36 radiation 20.0 270 > th dose independent rect. 13 4
798 131.39 radiation 1.0 270 > th dose dependent rect. 13 6
833 131.48 atmosphere 995.0 270 > th dose independent rect. 8 14
834 131.49 temperature 25.0 90 > th dose dependent sin 16 NA
848 131.66 radiation 1.0 270 > th dose dependent sin 14 NA
855 131.71 temperature 30.0 270 < th dose independent rect. 16 9
882 131.83 temperature 30.0 270 < th dose independent sin 21 NA
886 131.85 humidity 70.0 270 < th dose independent rect. 12 19
907 131.96 temperature 30.0 270 > th dose independent sin 21 NA
937 132.25 temperature 30.0 270 < th dose independent rect. 2 23
957 132.40 radiation 20.0 270 < th dose independent sin 14 NA
958 132.40 humidity 90.0 10 < th dose independent rect. 15 4
981 132.44 radiation 20.0 270 > th dose independent sin 14 NA