Os01g0302100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0302100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.63 | 0.469 | 6.76 | -1.45 | 0.316 | 1.81 | -0.343 | -0.807 | -0.081 | 10.9 | 20.1 | 1499 | -- | -- |
| 99.05 | 0.464 | 6.73 | -1.29 | 0.474 | 2 | -0.269 | -- | -0.0391 | 9.45 | 19.73 | 1975 | -- | -- |
| 100.12 | 0.466 | 6.76 | -1.47 | 0.315 | 1.81 | -- | -0.829 | -0.084 | 10.9 | 20.17 | 1500 | -- | -- |
| 99.12 | 0.464 | 6.73 | -1.26 | 0.503 | 1.94 | -- | -- | -0.0293 | 9.47 | 20.11 | 1999 | -- | -- |
| 106.14 | 0.48 | 6.76 | -1.45 | -- | 1.81 | -- | -0.745 | -0.0697 | -- | 20.1 | 1547 | -- | -- |
| 198.73 | 0.661 | 6.63 | -0.544 | 0.267 | -- | -0.377 | -- | 0.409 | 10.3 | -- | -- | -- | -- |
| 199.29 | 0.661 | 6.64 | -0.559 | 0.271 | -- | -- | -- | 0.408 | 10 | -- | -- | -- | -- |
| 106.69 | 0.481 | 6.75 | -1.25 | -- | 1.84 | -- | -- | -0.0192 | -- | 19.29 | 1545 | -- | -- |
| 134.25 | 0.54 | 6.68 | -- | 0.462 | 1.5 | -- | -- | 0.203 | 9.59 | 21.6 | 1972 | -- | -- |
| 203.71 | 0.667 | 6.64 | -0.563 | -- | -- | -- | -- | 0.407 | -- | -- | -- | -- | -- |
| 207.53 | 0.674 | 6.62 | -- | 0.273 | -- | -- | -- | 0.47 | 10.2 | -- | -- | -- | -- |
| 141.12 | 0.553 | 6.69 | -- | -- | 1.36 | -- | -- | 0.201 | -- | 21.31 | 1536 | -- | -- |
| 212.07 | 0.68 | 6.63 | -- | -- | -- | -- | -- | 0.47 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 2 | 97.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 3 | 98.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 9 | 99.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 21 |
| 18 | 99.30 | temperature | 20 | 1440 | > th | dose dependent | sin | 6 | NA |
| 46 | 99.63 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 55 | 99.70 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 62 | 99.72 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 107 | 100.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 12 |
| 119 | 100.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 124 | 100.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 15 |
| 166 | 100.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 188 | 100.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 342 | 100.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 416 | 101.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 7 |
| 573 | 101.49 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 575 | 101.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 20 |
| 699 | 101.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 20 |
| 777 | 102.14 | temperature | 30 | 1440 | < th | dose dependent | sin | 5 | NA |
| 851 | 102.30 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 873 | 102.34 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 9 |
| 898 | 102.38 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 23 |