Os01g0301900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF247, plant family protein.
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Os01g0301900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF247, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 129.06 | 0.534 | 11.7 | -0.422 | 1.34 | -2.88 | 0.912 | -3.33 | 0.683 | 10.4 | 0.7618 | 1446 | -- | -- |
| 135.12 | 0.541 | 11.8 | -0.625 | 1.37 | -2.08 | 0.891 | -- | 0.717 | 10.5 | 0.6691 | 1449 | -- | -- |
| 131.4 | 0.534 | 11.8 | -0.35 | 1.23 | -3.15 | -- | -4.11 | 0.666 | 10.4 | 0.6354 | 1458 | -- | -- |
| 137.46 | 0.546 | 11.8 | -0.653 | 1.3 | -2.08 | -- | -- | 0.701 | 10.4 | 1.17 | 1450 | -- | -- |
| 175.87 | 0.618 | 11.8 | -0.513 | -- | -3.77 | -- | -3.67 | 0.615 | -- | 0.5867 | 1553 | -- | -- |
| 184.42 | 0.637 | 11.7 | -0.219 | 1.38 | -- | 0.76 | -- | 0.915 | 10.4 | -- | -- | -- | -- |
| 186.74 | 0.64 | 11.7 | -0.188 | 1.37 | -- | -- | -- | 0.917 | 10.4 | -- | -- | -- | -- |
| 183.87 | 0.632 | 11.8 | -0.767 | -- | -3.11 | -- | -- | 0.572 | -- | 1.233 | 1571 | -- | -- |
| 147.94 | 0.566 | 11.8 | -- | 1.32 | -1.84 | -- | -- | 0.692 | 10.4 | 1.492 | 1450 | -- | -- |
| 302.28 | 0.812 | 11.8 | -0.211 | -- | -- | -- | -- | 0.912 | -- | -- | -- | -- | -- |
| 187.67 | 0.641 | 11.7 | -- | 1.38 | -- | -- | -- | 0.938 | 10.4 | -- | -- | -- | -- |
| 197.7 | 0.655 | 11.8 | -- | -- | -2.81 | -- | -- | 0.681 | -- | 1.491 | 1576 | -- | -- |
| 303.45 | 0.813 | 11.8 | -- | -- | -- | -- | -- | 0.936 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.67 | radiation | 1 | 1440 | < th | dose dependent | sin | 16 | NA |
| 4 | 127.10 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 5 | 127.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 8 | 127.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 10 |
| 16 | 127.30 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 19 |
| 28 | 127.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 13 |
| 134 | 130.00 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 136 | 130.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 18 |
| 141 | 130.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 145 | 130.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 147 | 130.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 21 |
| 169 | 130.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 21 |
| 189 | 130.20 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 225 | 131.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 228 | 131.48 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 235 | 132.12 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 238 | 132.28 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 243 | 132.44 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 248 | 132.65 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 249 | 132.66 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 15 |
| 251 | 132.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 253 | 132.68 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 259 | 132.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 265 | 132.79 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 267 | 132.82 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 271 | 132.83 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 301 | 132.93 | radiation | 1 | 1440 | < th | dose independent | sin | 20 | NA |
| 308 | 132.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 310 | 132.99 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 321 | 133.21 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 344 | 133.34 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 10 |
| 375 | 133.42 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 6 |
| 405 | 133.53 | humidity | 90 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 411 | 133.58 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 434 | 133.73 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 5 |
| 437 | 133.76 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 451 | 133.80 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 454 | 133.81 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 466 | 133.82 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 507 | 134.04 | humidity | 90 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 508 | 134.07 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 512 | 134.08 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 520 | 134.10 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 548 | 134.29 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 7 |
| 552 | 134.31 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 9 |
| 555 | 134.35 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 565 | 134.39 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 6 |
| 569 | 134.43 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 588 | 134.48 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 9 |
| 657 | 134.78 | wind | 7 | 43200 | < th | dose independent | sin | 20 | NA |
| 669 | 134.86 | wind | 7 | 43200 | > th | dose independent | sin | 21 | NA |
| 753 | 135.19 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 768 | 135.22 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 799 | 135.34 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 12 |
| 824 | 135.44 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 825 | 135.44 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 827 | 135.44 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 16 |
| 828 | 135.44 | wind | 5 | 43200 | > th | dose dependent | sin | 19 | NA |
| 835 | 135.46 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 878 | 135.57 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 881 | 135.59 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 895 | 135.66 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 897 | 135.66 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 908 | 135.69 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 19 |
| 913 | 135.70 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 10 |
| 940 | 135.76 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 17 |
| 941 | 135.77 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 966 | 135.81 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 994 | 135.88 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 7 |