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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0301500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.0265) R2 : 0.000201
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0169 (0.0557) R2dN8 : 0.000259 R2N8 : 0.000201
σ : 0.498
deviance : 113.95
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
101.65 0.474 3.22 -0.0869 0.179 -0.35 -0.818 0.186 0.0652 7.6 21.7 813 -- --
101.74 0.47 3.22 -0.139 0.178 -0.356 -0.86 -- 0.0526 7.7 21.7 812 -- --
103.05 0.473 3.2 -0.00646 0.178 -0.312 -- 0.572 0.0951 8.22 22.2 756 -- --
103.93 0.475 3.22 -0.16 0.181 -0.352 -- -- 0.0561 7.99 21.7 812 -- --
104.76 0.477 3.2 0.0311 -- -0.342 -- 0.623 0.116 -- 22.1 756 -- --
106.45 0.484 3.24 -0.269 0.239 -- -0.835 -- -0.0526 8.11 -- -- -- --
108.49 0.488 3.24 -0.291 0.239 -- -- -- -0.0512 8.63 -- -- -- --
105.59 0.479 3.22 -0.145 -- -0.394 -- -- 0.0679 -- 21.68 782 -- --
104.54 0.476 3.21 -- 0.173 -0.397 -- -- 0.0797 8.05 21.55 827 -- --
111.72 0.494 3.25 -0.291 -- -- -- -- -0.0491 -- -- -- -- --
110.73 0.492 3.23 -- 0.239 -- -- -- -0.0188 8.72 -- -- -- --
106.07 0.48 3.22 -- -- -0.434 -- -- 0.0911 -- 21.53 805 -- --
113.95 0.498 3.24 -- -- -- -- -- -0.0169 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 93.97 temperature 20.0 30 > th dose dependent rect. 2 1
2 94.11 atmosphere 1005.0 30 > th dose dependent rect. 2 1
3 94.17 temperature 20.0 30 > th dose independent rect. 2 1
4 94.20 atmosphere 1005.0 30 > th dose independent rect. 2 1
7 94.29 wind 3.0 30 < th dose dependent rect. 2 1
11 94.40 wind 3.0 30 < th dose independent rect. 2 1
15 94.53 humidity 80.0 30 > th dose independent rect. 2 1
18 94.61 humidity 50.0 30 > th dose dependent rect. 2 1
22 94.62 temperature 10.0 30 > th dose independent rect. 2 1
24 94.62 temperature 30.0 30 < th dose independent rect. 2 1
25 94.62 humidity 50.0 30 > th dose independent rect. 2 1
29 94.62 atmosphere 1010.0 30 < th dose independent rect. 2 1
31 94.62 radiation 1.0 30 < th dose independent rect. 2 1
36 94.62 precipitation 0.1 30 < th dose independent rect. 2 1
37 94.62 temperature 10.0 30 > th dose independent rect. 3 23
38 94.62 radiation 1.0 30 < th dose dependent rect. 2 1
43 94.62 precipitation 0.1 30 < th dose dependent rect. 2 1
49 95.21 radiation 1.0 43200 < th dose dependent rect. 3 1
50 95.30 atmosphere 1015.0 30 < th dose dependent rect. 2 1
52 95.59 temperature 30.0 30 < th dose dependent rect. 2 1
55 96.00 wind 1.0 30 > th dose independent rect. 2 1
77 96.66 wind 9.0 1440 < th dose independent rect. 3 1
78 96.66 temperature 10.0 1440 > th dose independent rect. 3 1
81 96.66 temperature 30.0 1440 < th dose independent rect. 3 1
85 96.66 humidity 50.0 1440 > th dose independent rect. 3 1
94 96.66 atmosphere 995.0 1440 > th dose independent rect. 3 1
95 96.66 radiation 1.0 1440 < th dose independent rect. 3 1
115 96.66 temperature 10.0 1440 > th dose independent rect. 4 23
128 96.94 radiation 1.0 30 > th dose dependent rect. 7 1
162 97.42 wind 9.0 30 < th dose independent rect. 3 23
165 98.09 temperature 25.0 90 < th dose independent rect. 6 7
166 98.16 temperature 30.0 30 < th dose dependent rect. 7 5
168 98.21 radiation 10.0 10 > th dose independent rect. 7 1
169 98.22 temperature 25.0 90 < th dose independent rect. 7 1
173 98.31 temperature 25.0 10 < th dose independent rect. 7 1
198 98.65 temperature 25.0 90 > th dose dependent rect. 1 3
199 98.68 temperature 25.0 90 < th dose independent rect. 6 9
220 98.82 radiation 10.0 10 > th dose dependent rect. 16 16
221 98.83 atmosphere 995.0 30 > th dose independent rect. 3 23
223 98.84 temperature 20.0 720 > th dose dependent rect. 3 3
228 98.91 temperature 25.0 270 < th dose dependent rect. 3 7
230 98.96 precipitation 0.1 30 < th dose independent rect. 3 23
231 98.96 precipitation 0.1 30 < th dose dependent rect. 3 23
234 99.04 atmosphere 1000.0 30 > th dose dependent rect. 7 1
236 99.05 temperature 25.0 270 < th dose dependent rect. 4 5
238 99.08 temperature 25.0 90 < th dose dependent rect. 6 1
258 99.32 wind 5.0 30 < th dose independent rect. 7 1
263 99.36 atmosphere 995.0 720 > th dose independent rect. 23 16
267 99.38 temperature 25.0 90 < th dose dependent rect. 6 3
278 99.52 temperature 10.0 720 > th dose independent rect. 15 8
279 99.52 atmosphere 995.0 720 > th dose independent rect. 15 8
280 99.52 temperature 10.0 720 > th dose independent rect. 23 16
298 99.59 wind 9.0 720 < th dose independent rect. 3 8
300 99.61 atmosphere 995.0 720 > th dose independent rect. 11 16
305 99.63 temperature 10.0 720 > th dose independent rect. 3 8
306 99.63 atmosphere 995.0 720 > th dose independent rect. 3 8
307 99.63 temperature 10.0 720 > th dose independent rect. 11 16
310 99.66 radiation 10.0 720 < th dose independent rect. 21 9
311 99.67 temperature 20.0 30 > th dose independent rect. 7 1
318 99.74 temperature 30.0 30 < th dose dependent rect. 7 14
325 99.81 radiation 10.0 30 < th dose independent rect. 3 23
327 99.81 temperature 20.0 270 > th dose dependent rect. 3 12
329 99.82 humidity 50.0 720 > th dose independent rect. 3 8
335 99.85 humidity 90.0 30 < th dose dependent rect. 7 1
338 99.86 temperature 10.0 720 > th dose dependent rect. 23 7
345 99.89 precipitation 0.1 720 < th dose independent rect. 15 8
347 99.89 precipitation 0.1 720 < th dose dependent rect. 15 8
352 99.97 temperature 10.0 30 > th dose dependent rect. 8 23
353 99.98 atmosphere 995.0 30 > th dose independent rect. 8 23
357 100.01 humidity 50.0 30 > th dose independent rect. 8 23
361 100.02 temperature 20.0 90 > th dose dependent rect. 3 15
363 100.03 temperature 30.0 720 < th dose dependent rect. 24 8
371 100.06 wind 9.0 30 < th dose dependent rect. 7 1
376 100.09 radiation 1.0 30 > th dose independent rect. 8 23
381 100.12 temperature 25.0 90 < th dose independent rect. 6 13
393 100.17 wind 9.0 1440 < th dose independent rect. 8 1
396 100.17 temperature 10.0 1440 > th dose independent rect. 8 1
401 100.17 humidity 50.0 1440 > th dose independent rect. 8 1
403 100.17 atmosphere 995.0 1440 > th dose independent rect. 8 1
406 100.17 atmosphere 1015.0 1440 < th dose independent rect. 8 1
407 100.17 temperature 10.0 1440 > th dose independent rect. 9 23
428 100.23 temperature 20.0 270 > th dose dependent sin 4 NA
430 100.23 temperature 20.0 270 > th dose dependent rect. 3 8
436 100.24 temperature 20.0 720 > th dose dependent rect. 23 10
441 100.27 wind 1.0 30 > th dose independent rect. 7 1
442 100.27 atmosphere 1010.0 30 < th dose independent rect. 7 1
443 100.27 precipitation 0.1 30 < th dose independent rect. 7 1
444 100.27 precipitation 0.1 30 < th dose dependent rect. 7 1
449 100.28 temperature 10.0 30 > th dose independent rect. 7 1
452 100.28 humidity 50.0 30 > th dose independent rect. 7 1
454 100.28 atmosphere 995.0 30 > th dose independent rect. 7 1
456 100.28 temperature 10.0 30 > th dose independent rect. 8 23
468 100.33 temperature 30.0 30 < th dose dependent rect. 2 10
489 100.39 precipitation 0.1 30 < th dose independent rect. 8 23
490 100.39 temperature 30.0 270 < th dose dependent sin 4 NA
493 100.39 precipitation 0.1 30 < th dose dependent rect. 8 23
502 100.41 temperature 10.0 30 > th dose dependent rect. 3 23
511 100.43 wind 9.0 30 < th dose independent rect. 8 23
540 100.50 precipitation 0.1 1440 < th dose independent rect. 8 1
541 100.50 precipitation 0.1 1440 < th dose dependent rect. 8 1
589 100.59 temperature 30.0 720 < th dose dependent rect. 1 2
594 100.60 precipitation 0.1 720 < th dose independent rect. 3 8
597 100.60 precipitation 0.1 720 < th dose dependent rect. 3 8
636 100.67 precipitation 0.1 720 < th dose independent rect. 23 16
656 100.67 precipitation 0.1 720 < th dose dependent rect. 23 16
657 100.68 humidity 50.0 30 > th dose independent rect. 3 23
666 100.70 temperature 10.0 720 > th dose dependent rect. 3 6
673 100.72 temperature 25.0 90 < th dose independent rect. 21 9
680 100.74 temperature 25.0 720 < th dose dependent rect. 3 2
722 100.81 humidity 90.0 30 < th dose independent rect. 7 1
737 100.83 radiation 10.0 270 < th dose independent rect. 20 12
748 100.86 temperature 25.0 720 < th dose dependent sin 8 NA
754 100.87 precipitation 0.1 720 < th dose independent rect. 11 16
758 100.87 precipitation 0.1 720 < th dose dependent rect. 11 16
791 100.94 wind 3.0 720 < th dose independent rect. 2 1
818 100.98 temperature 25.0 270 > th dose independent rect. 22 5
819 100.98 temperature 25.0 30 < th dose independent rect. 2 10
839 101.01 atmosphere 1010.0 30 < th dose independent rect. 8 23
840 101.01 temperature 25.0 10 > th dose dependent sin 6 NA
851 101.03 radiation 20.0 10 < th dose independent sin 10 NA
862 101.04 radiation 40.0 30 < th dose independent rect. 7 1
865 101.04 radiation 10.0 30 < th dose independent rect. 5 21
892 101.07 radiation 10.0 720 < th dose independent rect. 3 4
893 101.07 wind 1.0 720 > th dose independent rect. 15 8
897 101.09 temperature 20.0 720 > th dose independent rect. 3 3
909 101.11 wind 1.0 10 > th dose independent rect. 8 23
924 101.13 atmosphere 1015.0 720 < th dose independent rect. 3 8
946 101.16 humidity 80.0 90 < th dose dependent rect. 5 3
980 101.20 temperature 25.0 90 > th dose independent rect. 5 13