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Os01g0301000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.61 (0.0227) R2 : 0.849
β1 : 2.2 (0.083) R2dD : 0.241 R2D : 0.187
β2 : 1.5 (0.0668) R2dC : 0.231 R2C : 0.431
β3 : -1.33 (0.0649) R2dE : 0.193 R2E : 0.391
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.419 (0.0486) R2dN8 : 0.0332 R2N8 : -0.0206
σ : 0.424
deviance : 82.73
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_____
C
peak time of C : 15.4
E
wheather : precipitation
threshold : 0.1799
memory length : 300
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.93
open length of G : 2.44

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
81.45 0.424 7.61 2.15 1.49 -1.38 -0.167 -0.901 0.413 15.4 0.1303 290 2.85 2.77
82.91 0.424 7.6 2.19 1.46 -1.37 0.101 -- 0.42 15.3 0.01546 300 2.83 2.66
81.26 0.42 7.61 2.17 1.5 -1.36 -- -0.79 0.413 15.4 0.001368 292 2.9 2.63
82.73 0.424 7.61 2.2 1.5 -1.33 -- -- 0.419 15.4 0.1799 300 2.93 2.44
166.6 0.601 7.61 2.15 -- -1.9 -- -0.779 0.393 -- 0.9988 319 3.15 1.17
128.63 0.532 7.65 2.16 2.39 -- 0.538 -- 0.332 16.6 -- -- -- --
129.4 0.533 7.65 2.16 2.4 -- -- -- 0.334 16.5 -- -- -- --
165.29 0.599 7.62 2.41 -- -2.14 -- -- 0.504 -- 9.993 301 2.43 2.77
210.09 0.675 7.65 -- 1.61 -1.2 -- -- 0.23 15.6 0.3633 292 3.4 1.92
435.76 0.975 7.63 2.07 -- -- -- -- 0.271 -- -- -- -- --
252.47 0.743 7.71 -- 2.36 -- -- -- 0.0937 16.6 -- -- -- --
272.26 0.768 7.65 -- -- -2.07 -- -- 0.194 -- 10.12 406 0.0167 4.8
548.59 1.09 7.68 -- -- -- -- -- 0.0419 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.12 precipitation 0.1 270 < th dose independent rect. 3 3
2 83.12 precipitation 0.1 270 < th dose dependent rect. 3 3
3 83.69 wind 5.0 270 < th dose independent rect. 3 3
4 83.77 wind 9.0 270 < th dose independent rect. 6 21
6 84.54 precipitation 0.1 270 < th dose independent rect. 2 5
7 84.54 precipitation 0.1 270 < th dose dependent rect. 2 5
8 84.65 wind 9.0 270 < th dose dependent rect. 3 3
9 84.67 wind 5.0 270 < th dose independent rect. 2 5
13 84.82 temperature 10.0 270 > th dose independent rect. 3 3
15 84.82 temperature 30.0 270 < th dose independent rect. 3 3
16 84.82 humidity 50.0 270 > th dose independent rect. 3 3
19 84.82 atmosphere 995.0 270 > th dose independent rect. 3 3
20 84.82 atmosphere 1015.0 270 < th dose independent rect. 3 3
21 84.82 radiation 20.0 270 < th dose independent rect. 3 3
24 84.82 temperature 10.0 270 > th dose independent rect. 6 21
25 84.84 radiation 30.0 90 < th dose independent rect. 3 6
27 84.98 radiation 40.0 270 < th dose dependent rect. 3 3
28 85.01 wind 9.0 270 < th dose independent rect. 7 19
29 85.05 temperature 10.0 270 > th dose dependent rect. 3 3
44 85.71 radiation 40.0 270 < th dose dependent rect. 2 5
46 85.78 humidity 70.0 270 > th dose independent rect. 2 5
52 85.89 temperature 10.0 270 > th dose independent rect. 2 5
54 85.89 temperature 30.0 270 < th dose independent rect. 2 5
55 85.89 humidity 50.0 270 > th dose independent rect. 2 5
57 85.89 atmosphere 995.0 270 > th dose independent rect. 2 5
58 85.89 atmosphere 1015.0 270 < th dose independent rect. 2 5
60 85.89 temperature 10.0 270 > th dose independent rect. 7 19
61 86.00 wind 9.0 270 < th dose dependent rect. 2 5
62 86.06 wind 9.0 90 < th dose independent rect. 9 18
80 86.51 temperature 10.0 30 > th dose independent rect. 4 5
85 86.51 atmosphere 995.0 30 > th dose independent rect. 4 5
86 86.51 atmosphere 1015.0 30 < th dose independent rect. 4 5
87 86.51 temperature 10.0 30 > th dose independent rect. 9 19
109 86.66 precipitation 0.1 270 < th dose independent rect. 6 21
111 86.66 precipitation 0.1 270 < th dose dependent rect. 6 21
122 86.72 temperature 10.0 270 > th dose dependent rect. 2 5
143 86.88 humidity 50.0 270 > th dose dependent rect. 3 3
145 86.96 precipitation 0.1 270 < th dose independent rect. 7 19
146 86.96 precipitation 0.1 270 < th dose dependent rect. 7 19
152 87.02 radiation 20.0 270 < th dose independent rect. 1 7
248 88.13 humidity 50.0 270 > th dose dependent rect. 2 5
318 88.82 atmosphere 995.0 270 > th dose independent rect. 7 19
331 88.93 atmosphere 995.0 30 > th dose independent rect. 9 19
369 89.48 atmosphere 995.0 270 > th dose independent rect. 6 21
500 90.93 radiation 1.0 270 < th dose dependent rect. 3 15
502 90.97 radiation 1.0 270 < th dose independent rect. 3 14
534 91.26 radiation 1.0 270 < th dose independent rect. 3 9
536 91.29 atmosphere 1015.0 270 < th dose dependent rect. 3 2
545 91.38 radiation 1.0 270 < th dose dependent rect. 3 9
564 91.68 wind 9.0 270 < th dose dependent rect. 7 19
584 91.88 atmosphere 1015.0 30 < th dose dependent rect. 4 5
608 92.23 temperature 15.0 270 > th dose independent rect. 12 9
609 92.27 precipitation 0.1 270 < th dose independent rect. 2 17
611 92.27 precipitation 0.1 270 < th dose dependent rect. 2 17
613 92.29 atmosphere 1010.0 270 < th dose independent rect. 12 9
630 92.35 humidity 50.0 270 > th dose dependent rect. 19 7
644 92.61 wind 1.0 270 > th dose independent rect. 2 5
645 92.64 wind 7.0 270 < th dose independent rect. 19 7
647 92.66 wind 9.0 270 < th dose independent rect. 21 15
659 92.82 temperature 10.0 270 > th dose independent rect. 21 15
660 92.82 atmosphere 995.0 270 > th dose independent rect. 21 15
669 92.95 precipitation 0.1 270 < th dose independent rect. 6 9
670 92.95 precipitation 0.1 270 < th dose dependent rect. 6 9
671 92.96 wind 9.0 270 < th dose independent rect. 7 7
677 93.00 precipitation 0.1 270 < th dose independent rect. 14 17
679 93.00 precipitation 0.1 270 < th dose dependent rect. 14 17
680 93.01 wind 9.0 270 < th dose independent rect. 6 9
682 93.03 precipitation 0.1 270 < th dose independent rect. 15 15
684 93.03 precipitation 0.1 270 < th dose dependent rect. 15 15
687 93.05 precipitation 0.1 270 < th dose independent rect. 7 7
688 93.05 precipitation 0.1 270 < th dose dependent rect. 7 7
697 93.16 temperature 10.0 270 > th dose independent rect. 19 7
698 93.16 temperature 30.0 270 < th dose independent rect. 19 7
699 93.16 humidity 50.0 270 > th dose independent rect. 19 7
701 93.16 atmosphere 995.0 270 > th dose independent rect. 19 7
702 93.16 radiation 1.0 270 < th dose independent rect. 19 7
707 93.16 temperature 10.0 270 > th dose independent rect. 2 17
708 93.16 atmosphere 1015.0 270 < th dose independent rect. 2 17
710 93.16 radiation 1.0 270 < th dose dependent rect. 19 7
716 93.17 temperature 10.0 270 > th dose independent rect. 6 9
717 93.17 atmosphere 1015.0 270 < th dose independent rect. 6 9
718 93.17 temperature 10.0 270 > th dose independent rect. 15 15
721 93.19 temperature 10.0 270 > th dose independent rect. 7 7
722 93.19 atmosphere 995.0 270 > th dose independent rect. 7 7
723 93.19 atmosphere 1015.0 270 < th dose independent rect. 7 7
724 93.19 temperature 10.0 270 > th dose independent rect. 14 17
730 93.29 atmosphere 1015.0 30 < th dose independent rect. 9 19
736 93.33 atmosphere 995.0 270 > th dose independent rect. 6 9
737 93.33 radiation 40.0 270 < th dose independent rect. 14 16
749 93.38 humidity 50.0 270 > th dose independent rect. 21 15
771 93.48 atmosphere 995.0 30 > th dose dependent rect. 4 5
794 93.56 radiation 40.0 270 < th dose dependent rect. 15 16
799 93.60 precipitation 0.1 270 < th dose independent rect. 19 7
800 93.60 precipitation 0.1 270 < th dose dependent rect. 19 7
806 93.65 atmosphere 995.0 270 > th dose dependent rect. 4 1
816 93.75 wind 1.0 270 > th dose independent rect. 3 2
825 93.81 wind 1.0 270 > th dose independent rect. 12 9
838 93.87 precipitation 0.1 270 < th dose independent rect. 12 9
840 93.87 precipitation 0.1 270 < th dose dependent rect. 12 9
841 93.88 humidity 50.0 90 > th dose dependent rect. 3 8
867 94.00 atmosphere 995.0 270 > th dose dependent rect. 3 3
877 94.07 humidity 70.0 90 > th dose independent rect. 3 8
878 94.07 humidity 50.0 270 > th dose dependent rect. 21 4
892 94.15 wind 9.0 270 < th dose independent rect. 14 17
893 94.17 humidity 50.0 270 > th dose independent rect. 7 7
978 94.42 wind 9.0 270 < th dose independent rect. 2 17
985 94.45 wind 9.0 270 < th dose independent rect. 15 15
990 94.49 temperature 10.0 1440 > th dose independent rect. 5 5
993 94.49 atmosphere 995.0 1440 > th dose independent rect. 5 5
994 94.49 atmosphere 1015.0 1440 < th dose independent rect. 5 5
997 94.49 temperature 10.0 1440 > th dose independent rect. 10 19