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Os01g0300600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Borrelia outer surface lipoprotein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0144) R2 : 0.57
β1 : 1.15 (0.0526) R2dD : 0.465 R2D : 0.273
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.47 (0.0307) R2dN8 : 0.297 R2N8 : 0.106
σ : 0.27
deviance : 33.28
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.62 0.242 11.7 1.16 0.32 0.69 -0.0704 -1.02 0.545 18 93.62 355 -- --
27.27 0.243 11.7 1.13 0.349 0.671 0.254 -- 0.548 18 93.2 375 -- --
26.62 0.24 11.7 1.16 0.323 0.693 -- -0.969 0.545 17.9 93.59 351 -- --
27.44 0.244 11.7 1.12 0.339 0.671 -- -- 0.544 18 93.31 375 -- --
30.54 0.257 11.7 1.18 -- 0.732 -- -1.06 0.496 -- 94.84 322 -- --
31.49 0.263 11.7 1.15 0.185 -- 0.0797 -- 0.475 17.7 -- -- -- --
31.5 0.263 11.7 1.15 0.185 -- -- -- 0.475 17.7 -- -- -- --
31.24 0.26 11.7 1.15 -- 0.746 -- -- 0.488 -- 94.95 295 -- --
59.84 0.36 11.7 -- 0.386 0.73 -- -- 0.452 18.1 92 392 -- --
33.28 0.27 11.7 1.15 -- -- -- -- 0.47 -- -- -- -- --
66.53 0.382 11.7 -- 0.167 -- -- -- 0.347 18 -- -- -- --
64.55 0.374 11.7 -- -- 0.419 -- -- 0.434 -- 89.16 1262 -- --
67.98 0.385 11.7 -- -- -- -- -- 0.343 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.33 radiation 1.0 1440 < th dose independent rect. 11 1
2 27.33 radiation 1.0 1440 < th dose dependent rect. 11 1
3 27.73 radiation 1.0 1440 > th dose independent rect. 11 2
5 27.81 humidity 90.0 720 > th dose dependent rect. 20 5
17 28.24 humidity 90.0 720 > th dose dependent rect. 18 13
47 28.33 wind 7.0 720 < th dose independent rect. 17 1
57 28.34 humidity 90.0 720 > th dose dependent rect. 4 22
65 28.37 humidity 90.0 720 > th dose dependent sin 13 NA
67 28.37 radiation 1.0 1440 < th dose dependent rect. 9 8
85 28.44 precipitation 0.1 270 > th dose independent rect. 2 2
86 28.44 precipitation 0.1 270 > th dose dependent rect. 2 2
92 28.47 wind 7.0 720 < th dose independent rect. 15 14
142 28.59 wind 7.0 720 < th dose independent rect. 17 10
169 28.66 wind 7.0 720 < th dose independent rect. 17 18
196 28.73 humidity 90.0 270 > th dose dependent rect. 5 1
201 28.74 atmosphere 1005.0 270 > th dose dependent rect. 23 8
210 28.76 humidity 90.0 270 > th dose dependent sin 7 NA
244 28.78 humidity 90.0 720 > th dose dependent rect. 8 23
263 28.80 atmosphere 1010.0 270 < th dose dependent rect. 22 10
276 28.80 humidity 90.0 270 > th dose dependent rect. 21 22
280 28.81 humidity 90.0 720 > th dose dependent no NA NA
304 28.81 humidity 90.0 270 > th dose dependent rect. 23 23
306 28.82 humidity 90.0 720 > th dose independent rect. 20 5
311 28.82 atmosphere 1010.0 10 < th dose dependent rect. 22 12
364 28.85 wind 7.0 720 < th dose independent rect. 21 8
413 28.89 temperature 15.0 30 > th dose independent rect. 5 23
439 28.92 humidity 90.0 30 > th dose independent rect. 5 5
456 28.95 radiation 10.0 30 < th dose independent rect. 9 20
462 28.96 humidity 90.0 30 > th dose independent rect. 5 3
464 28.96 humidity 90.0 30 > th dose dependent rect. 5 7
505 29.01 humidity 70.0 720 > th dose dependent rect. 5 1
528 29.03 radiation 10.0 30 < th dose dependent rect. 9 20
534 29.04 atmosphere 1010.0 720 < th dose independent rect. 20 4
542 29.05 wind 3.0 720 > th dose dependent rect. 21 2
550 29.06 humidity 90.0 30 > th dose dependent rect. 5 5
557 29.07 wind 5.0 720 > th dose independent rect. 21 2
570 29.08 wind 9.0 720 < th dose independent rect. 6 23
580 29.09 precipitation 0.1 720 < th dose independent rect. 6 23
584 29.09 precipitation 0.1 720 < th dose dependent rect. 6 23
611 29.11 humidity 90.0 720 > th dose dependent rect. 11 15
616 29.12 humidity 90.0 1440 > th dose independent rect. 20 1
619 29.12 radiation 1.0 1440 > th dose independent rect. 11 8
620 29.12 radiation 1.0 1440 < th dose independent rect. 11 8
627 29.12 radiation 1.0 1440 < th dose independent rect. 11 13
631 29.12 radiation 1.0 1440 < th dose independent rect. 11 16
638 29.12 radiation 1.0 1440 < th dose dependent rect. 11 13
640 29.12 radiation 1.0 1440 < th dose dependent rect. 11 16
644 29.13 atmosphere 1010.0 720 < th dose independent rect. 22 1
647 29.13 temperature 25.0 1440 > th dose independent rect. 19 10
651 29.13 temperature 25.0 720 < th dose independent rect. 18 14
711 29.15 temperature 25.0 1440 < th dose independent rect. 19 10
716 29.15 atmosphere 1000.0 30 > th dose independent rect. 5 12
727 29.15 precipitation 0.1 720 < th dose independent rect. 17 16
730 29.15 radiation 1.0 1440 < th dose dependent sin 21 NA
747 29.15 precipitation 0.1 720 < th dose dependent rect. 17 16
790 29.17 precipitation 0.1 720 < th dose independent rect. 21 8
793 29.17 precipitation 0.1 720 < th dose dependent rect. 21 8
802 29.18 precipitation 0.1 720 < th dose independent rect. 17 18
815 29.18 precipitation 0.1 720 < th dose dependent rect. 17 18
817 29.19 humidity 90.0 1440 < th dose independent rect. 20 1
827 29.19 atmosphere 1005.0 10 > th dose dependent rect. 24 9
861 29.21 wind 9.0 30 < th dose independent rect. 17 12
880 29.22 humidity 90.0 10 > th dose independent rect. 6 1
882 29.22 wind 7.0 720 < th dose independent rect. 15 5
883 29.22 wind 5.0 720 < th dose independent rect. 23 5
910 29.22 temperature 25.0 720 > th dose independent rect. 17 16
930 29.22 radiation 10.0 10 < th dose dependent rect. 6 23
937 29.23 precipitation 0.1 30 < th dose independent rect. 17 12
938 29.23 radiation 20.0 720 < th dose dependent rect. 5 1
943 29.23 precipitation 0.1 30 < th dose dependent rect. 17 12
947 29.24 radiation 1.0 1440 > th dose independent sin 19 NA
948 29.24 radiation 1.0 1440 < th dose independent sin 19 NA
956 29.24 temperature 10.0 30 > th dose independent rect. 5 12
958 29.24 temperature 10.0 30 > th dose independent rect. 17 12
959 29.24 atmosphere 1015.0 30 < th dose independent rect. 5 12
960 29.24 radiation 20.0 30 < th dose independent rect. 17 12
987 29.25 wind 5.0 30 < th dose independent rect. 17 12
993 29.25 radiation 40.0 30 < th dose dependent rect. 17 12
999 29.26 atmosphere 1005.0 270 < th dose independent rect. 22 9