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Os01g0299300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lambda integrase-like, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.36 (0.0221) R2 : 0.195
β1 : -0.843 (0.0809) R2dD : 0.199 R2D : 0.169
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.156 (0.0472) R2dN8 : 0.0258 R2N8 : -0.00401
σ : 0.415
deviance : 78.78
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
63.44 0.374 6.39 -0.975 0.617 -0.782 -1.5 1.72 -0.219 1.3 0.6393 143 -- --
64.88 0.375 6.38 -0.886 0.624 -0.798 0.366 -- -0.18 1.84 0.05534 169 -- --
64.44 0.374 6.38 -0.91 0.502 -0.679 -- 0.55 -0.217 1.09 0.05884 124 -- --
65.53 0.377 6.38 -0.924 0.639 -0.795 -- -- -0.191 1.8 0.06 166 -- --
67.53 0.383 6.37 -0.917 -- -0.325 -- 0.393 -0.218 -- 0.04998 106 -- --
72.45 0.399 6.36 -0.818 0.297 -- -0.408 -- -0.15 11.8 -- -- -- --
73.16 0.401 6.36 -0.834 0.299 -- -- -- -0.152 12 -- -- -- --
68.85 0.386 6.38 -0.897 -- -0.324 -- -- -0.207 -- 0.007722 121 -- --
87.13 0.435 6.35 -- 0.574 -0.722 -- -- -0.0754 1.79 0.87 164 -- --
78.78 0.415 6.36 -0.843 -- -- -- -- -0.156 -- -- -- -- --
91.48 0.447 6.34 -- 0.31 -- -- -- -0.0587 12.2 -- -- -- --
88.14 0.437 6.35 -- -- -0.307 -- -- -0.0805 -- 0.05001 115 -- --
97.52 0.461 6.34 -- -- -- -- -- -0.0622 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 60.36 radiation 1.0 270 < th dose dependent rect. 5 22
3 61.00 radiation 1.0 270 < th dose independent rect. 9 18
8 61.12 radiation 10.0 270 < th dose dependent rect. 11 16
11 61.18 radiation 1.0 270 < th dose dependent rect. 9 18
23 61.59 radiation 20.0 90 < th dose dependent sin 11 NA
24 61.60 radiation 1.0 43200 < th dose dependent rect. 3 1
38 62.16 radiation 1.0 90 > th dose independent rect. 15 18
48 62.44 humidity 90.0 30 < th dose independent rect. 24 9
51 62.54 radiation 1.0 90 < th dose independent rect. 19 22
53 62.55 radiation 1.0 270 > th dose independent rect. 11 22
55 62.59 temperature 25.0 30 > th dose independent rect. 15 19
57 62.62 temperature 10.0 270 > th dose dependent rect. 13 10
59 62.64 humidity 90.0 10 < th dose dependent rect. 16 17
60 62.65 radiation 1.0 30 > th dose dependent sin 11 NA
68 62.72 radiation 1.0 90 < th dose dependent rect. 19 22
72 62.74 radiation 1.0 270 > th dose independent rect. 13 19
82 62.86 radiation 1.0 90 > th dose dependent rect. 16 17
89 62.93 humidity 90.0 90 < th dose dependent rect. 15 18
92 63.00 temperature 10.0 90 > th dose dependent rect. 15 18
101 63.10 humidity 90.0 30 < th dose dependent rect. 24 9
102 63.11 temperature 10.0 90 > th dose dependent rect. 15 10
104 63.13 temperature 20.0 90 > th dose dependent rect. 2 1
108 63.15 radiation 1.0 270 < th dose independent sin 13 NA
111 63.16 humidity 90.0 30 < th dose independent rect. 16 17
114 63.19 temperature 20.0 10 > th dose dependent rect. 2 2
116 63.21 radiation 1.0 90 > th dose independent sin 12 NA
128 63.32 temperature 25.0 90 > th dose dependent rect. 1 3
154 63.54 temperature 25.0 90 > th dose independent rect. 1 3
163 63.58 temperature 25.0 90 > th dose independent rect. 2 1
165 63.59 temperature 20.0 10 > th dose independent rect. 2 1
166 63.59 atmosphere 995.0 30 > th dose independent rect. 3 23
173 63.63 temperature 25.0 270 > th dose independent rect. 13 9
182 63.67 temperature 10.0 90 > th dose dependent rect. 3 6
193 63.73 humidity 80.0 10 > th dose independent rect. 2 1
195 63.73 humidity 80.0 10 > th dose dependent rect. 2 1
220 63.82 wind 3.0 10 < th dose dependent rect. 2 1
224 63.83 wind 9.0 1440 < th dose independent rect. 3 1
225 63.83 temperature 10.0 1440 > th dose independent rect. 3 1
228 63.83 temperature 30.0 1440 < th dose independent rect. 3 1
232 63.83 humidity 50.0 1440 > th dose independent rect. 3 1
241 63.83 atmosphere 995.0 1440 > th dose independent rect. 3 1
242 63.83 radiation 1.0 1440 < th dose independent rect. 3 1
262 63.83 wind 1.0 10 > th dose independent rect. 16 17
264 63.83 temperature 10.0 1440 > th dose independent rect. 4 23
276 63.84 temperature 10.0 30 > th dose dependent rect. 3 23
279 63.85 temperature 10.0 10 > th dose dependent rect. 16 17
283 63.87 wind 1.0 30 < th dose independent rect. 2 1
285 63.87 temperature 10.0 270 > th dose dependent rect. 13 20
294 63.89 atmosphere 1010.0 30 < th dose dependent rect. 2 1
297 63.90 humidity 90.0 90 < th dose independent rect. 3 6
310 63.94 wind 9.0 30 < th dose independent rect. 2 1
311 63.94 temperature 10.0 30 > th dose independent rect. 2 1
313 63.94 temperature 30.0 30 < th dose independent rect. 2 1
314 63.94 humidity 50.0 30 > th dose independent rect. 2 1
317 63.94 atmosphere 995.0 30 > th dose independent rect. 2 1
319 63.94 atmosphere 1010.0 30 < th dose independent rect. 2 1
321 63.94 radiation 1.0 30 < th dose independent rect. 2 1
326 63.94 precipitation 0.1 30 < th dose independent rect. 2 1
328 63.94 temperature 10.0 30 > th dose independent rect. 3 23
331 63.94 radiation 1.0 30 < th dose dependent rect. 2 1
336 63.94 precipitation 0.1 30 < th dose dependent rect. 2 1
339 63.94 temperature 20.0 10 > th dose dependent rect. 15 19
348 63.96 atmosphere 995.0 30 > th dose dependent rect. 2 1
365 64.01 precipitation 0.1 30 < th dose independent rect. 3 23
371 64.01 precipitation 0.1 30 < th dose dependent rect. 3 23
372 64.02 atmosphere 1000.0 90 > th dose dependent rect. 3 6
374 64.03 atmosphere 995.0 90 > th dose independent rect. 9 18
375 64.04 wind 5.0 90 < th dose independent rect. 3 6
418 64.09 temperature 30.0 30 < th dose dependent rect. 2 1
430 64.11 wind 1.0 30 > th dose independent rect. 2 1
435 64.12 temperature 20.0 270 > th dose independent rect. 14 18
443 64.15 atmosphere 995.0 270 > th dose dependent rect. 9 18
455 64.20 precipitation 0.1 90 < th dose independent rect. 3 6
458 64.20 precipitation 0.1 90 < th dose dependent rect. 3 6
476 64.27 radiation 1.0 30 > th dose dependent rect. 5 4
477 64.27 wind 9.0 270 < th dose dependent rect. 3 5
504 64.29 wind 9.0 90 < th dose independent rect. 3 6
505 64.29 temperature 10.0 90 > th dose independent rect. 3 6
507 64.29 humidity 50.0 90 > th dose independent rect. 3 6
508 64.29 atmosphere 995.0 90 > th dose independent rect. 3 6
509 64.29 atmosphere 1015.0 90 < th dose independent rect. 3 6
510 64.29 temperature 10.0 90 > th dose independent rect. 9 18
516 64.30 atmosphere 995.0 90 > th dose dependent rect. 9 7
524 64.33 temperature 30.0 90 < th dose independent rect. 3 6
527 64.34 wind 1.0 90 > th dose independent rect. 9 6
528 64.34 atmosphere 995.0 90 > th dose independent rect. 9 6
542 64.38 precipitation 0.1 270 < th dose independent rect. 3 14
546 64.38 precipitation 0.1 270 < th dose dependent rect. 3 14
548 64.39 wind 7.0 90 < th dose independent rect. 15 18
552 64.40 precipitation 0.1 90 < th dose independent rect. 9 18
555 64.40 precipitation 0.1 90 < th dose dependent rect. 9 18
557 64.41 precipitation 0.1 90 < th dose independent rect. 15 18
560 64.41 precipitation 0.1 90 < th dose dependent rect. 15 18
564 64.42 temperature 15.0 10 > th dose dependent rect. 15 10
571 64.44 temperature 10.0 90 > th dose independent rect. 9 6
572 64.44 atmosphere 1015.0 90 < th dose independent rect. 9 6
573 64.44 wind 9.0 90 < th dose independent rect. 9 18
574 64.44 temperature 10.0 90 > th dose independent rect. 15 18
577 64.45 precipitation 0.1 90 < th dose independent rect. 9 6
579 64.45 precipitation 0.1 90 < th dose dependent rect. 9 6
586 64.47 radiation 1.0 90 > th dose independent rect. 4 5
614 64.50 radiation 10.0 90 < th dose dependent rect. 19 14
627 64.53 atmosphere 1000.0 270 > th dose independent rect. 18 9
637 64.54 humidity 50.0 270 > th dose independent rect. 17 10
642 64.55 wind 9.0 270 < th dose independent rect. 3 15
654 64.59 wind 9.0 90 < th dose independent rect. 9 6
655 64.59 temperature 10.0 270 > th dose independent rect. 17 10
657 64.59 radiation 20.0 270 < th dose independent rect. 17 10
660 64.59 temperature 10.0 270 > th dose independent rect. 3 14
661 64.59 atmosphere 1015.0 270 < th dose independent rect. 3 14
666 64.60 wind 9.0 30 < th dose independent rect. 3 23
671 64.61 humidity 90.0 10 < th dose dependent rect. 22 11
689 64.62 radiation 10.0 90 < th dose dependent rect. 19 12
703 64.64 wind 9.0 270 < th dose independent rect. 18 9
760 64.75 atmosphere 1015.0 90 < th dose independent rect. 15 18
777 64.76 temperature 20.0 90 > th dose independent rect. 3 22
789 64.79 humidity 50.0 90 > th dose independent rect. 9 6
792 64.79 humidity 90.0 10 < th dose dependent sin 11 NA
794 64.80 radiation 40.0 270 < th dose independent rect. 3 5
803 64.81 temperature 30.0 270 < th dose independent rect. 18 9
810 64.82 temperature 20.0 90 > th dose independent rect. 6 3
828 64.85 humidity 90.0 10 < th dose dependent rect. 5 4
873 64.92 temperature 30.0 270 < th dose independent rect. 8 6
882 64.93 precipitation 0.1 270 < th dose independent rect. 18 9
887 64.93 precipitation 0.1 270 < th dose dependent rect. 18 9
890 64.94 precipitation 0.1 270 < th dose independent rect. 13 20
891 64.94 temperature 25.0 10 > th dose dependent sin 11 NA
894 64.94 precipitation 0.1 270 < th dose dependent rect. 13 20
898 64.95 humidity 90.0 1440 < th dose dependent rect. 3 1
904 64.96 atmosphere 1005.0 90 > th dose independent rect. 3 6
925 64.98 humidity 90.0 90 < th dose independent rect. 5 4
944 65.01 humidity 50.0 270 > th dose independent rect. 8 19
956 65.03 wind 7.0 270 < th dose independent rect. 13 20
972 65.05 atmosphere 995.0 90 > th dose independent rect. 15 18
983 65.06 radiation 40.0 90 < th dose independent rect. 15 18
987 65.08 wind 1.0 10 > th dose independent rect. 9 7