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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0297700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF6, transmembrane domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0482) R2 : 0.0119
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.238 (0.101) R2dN8 : 0.0154 R2N8 : 0.0119
σ : 0.907
deviance : 377.91
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
329.55 0.853 3.07 0.713 0.531 1.12 1.1 -5.03 -0.23 12.1 50.38 3971 -- --
342.8 0.862 3.17 0.376 0.566 0.59 0.787 -- -0.143 12.1 67.98 11758 -- --
334.44 0.852 3.07 0.731 0.524 1.07 -- -4.66 -0.219 12.3 50.54 4084 -- --
345.57 0.866 3.17 0.41 0.552 0.601 -- -- -0.131 12.4 67.56 11809 -- --
351.35 0.873 3.07 0.844 -- 1.44 -- -5.37 -0.258 -- 50.78 4062 -- --
348.38 0.875 3.18 0.489 0.564 -- 0.841 -- -0.177 12.3 -- -- -- --
351.43 0.878 3.18 0.522 0.561 -- -- -- -0.173 12.4 -- -- -- --
362.53 0.887 3.18 0.377 -- 0.708 -- -- -0.149 -- 67.44 11166 -- --
349.27 0.87 3.17 -- 0.555 0.686 -- -- -0.126 12.5 67.1 30781 -- --
371.23 0.9 3.19 0.503 -- -- -- -- -0.182 -- -- -- -- --
358.62 0.886 3.19 -- 0.554 -- -- -- -0.231 12.4 -- -- -- --
362.62 0.887 3.16 -- -- 0.715 -- -- -0.0759 -- 87.6 26840 -- --
377.91 0.907 3.2 -- -- -- -- -- -0.238 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 325.42 radiation 10.0 4320 > th dose independent rect. 12 1
2 325.47 temperature 30.0 10 > th dose independent rect. 14 1
4 326.08 wind 1.0 43200 < th dose dependent rect. 9 1
5 326.24 wind 1.0 43200 < th dose independent rect. 9 1
6 326.25 radiation 10.0 4320 < th dose independent rect. 12 1
8 326.62 wind 3.0 1440 < th dose dependent rect. 15 1
10 327.09 wind 1.0 90 < th dose dependent rect. 13 1
11 327.22 radiation 10.0 4320 > th dose dependent rect. 5 2
23 327.26 wind 1.0 43200 > th dose independent rect. 9 1
26 327.64 radiation 10.0 4320 < th dose dependent rect. 12 1
27 327.81 wind 9.0 90 > th dose independent rect. 16 19
28 328.17 wind 9.0 90 > th dose dependent rect. 16 19
33 328.54 wind 3.0 1440 < th dose independent rect. 15 1
35 329.03 radiation 10.0 4320 < th dose independent rect. 11 21
38 329.30 wind 1.0 43200 < th dose dependent rect. 23 1
41 329.35 wind 3.0 1440 > th dose independent rect. 15 1
42 329.44 humidity 80.0 1440 > th dose independent rect. 11 1
47 329.57 humidity 90.0 4320 > th dose dependent rect. 8 1
48 329.66 radiation 10.0 4320 > th dose independent rect. 5 2
61 329.77 humidity 90.0 4320 > th dose dependent rect. 8 3
66 330.04 humidity 80.0 1440 < th dose independent rect. 11 1
67 330.06 radiation 10.0 4320 > th dose independent rect. 11 20
70 330.10 humidity 50.0 4320 > th dose independent rect. 11 6
71 330.18 humidity 50.0 4320 > th dose independent rect. 18 23
72 330.21 humidity 50.0 4320 > th dose independent rect. 8 9
73 330.21 humidity 50.0 4320 > th dose independent rect. 4 13
76 330.22 humidity 50.0 4320 > th dose independent rect. 23 18
77 330.23 humidity 50.0 4320 > th dose independent rect. 1 16
78 330.23 humidity 50.0 4320 > th dose independent rect. 20 21
89 330.33 humidity 80.0 4320 > th dose dependent rect. 10 1
90 330.37 humidity 80.0 43200 > th dose independent rect. 18 2
95 330.47 radiation 10.0 4320 < th dose dependent rect. 11 19
100 330.56 humidity 80.0 43200 < th dose independent rect. 18 2
102 330.59 temperature 20.0 90 < th dose independent rect. 2 9
104 330.65 precipitation 0.1 4320 > th dose independent rect. 23 1
105 330.65 precipitation 0.1 4320 > th dose dependent rect. 23 1
106 330.66 wind 1.0 43200 > th dose independent rect. 22 1
110 330.69 wind 9.0 14400 < th dose dependent rect. 22 1
113 330.77 wind 1.0 43200 < th dose independent rect. 22 2
114 330.77 radiation 10.0 4320 < th dose dependent rect. 12 5
118 330.85 humidity 90.0 4320 > th dose dependent rect. 8 6
121 330.93 precipitation 0.1 4320 < th dose independent rect. 23 1
122 330.93 precipitation 0.1 4320 < th dose dependent rect. 23 1
123 330.98 temperature 20.0 90 < th dose independent rect. 2 12
126 331.00 radiation 10.0 4320 < th dose dependent rect. 11 13
127 331.01 humidity 50.0 4320 > th dose independent rect. 15 23
128 331.01 radiation 10.0 4320 < th dose dependent rect. 11 10
131 331.01 radiation 10.0 4320 < th dose dependent rect. 11 16
133 331.02 radiation 10.0 4320 < th dose dependent rect. 11 8
138 331.07 humidity 50.0 4320 > th dose independent sin 23 NA
145 331.09 humidity 50.0 4320 > th dose independent rect. 15 2
148 331.11 humidity 50.0 4320 > th dose independent rect. 11 18
149 331.11 humidity 50.0 4320 > th dose independent rect. 11 23
156 331.13 humidity 90.0 4320 > th dose independent rect. 8 3
163 331.14 humidity 50.0 4320 > th dose independent rect. 11 10
169 331.15 humidity 50.0 4320 > th dose independent rect. 11 13
173 331.16 humidity 50.0 4320 > th dose independent rect. 8 21
174 331.16 wind 1.0 14400 > th dose dependent rect. 22 1
183 331.19 humidity 80.0 43200 > th dose independent rect. 17 4
185 331.19 humidity 50.0 4320 > th dose independent rect. 8 13
189 331.20 wind 1.0 90 < th dose independent rect. 13 1
195 331.20 humidity 50.0 4320 > th dose independent rect. 8 16
196 331.20 humidity 50.0 4320 > th dose independent rect. 4 17
203 331.20 humidity 50.0 4320 > th dose independent rect. 23 22
238 331.23 humidity 50.0 4320 > th dose independent no NA NA
341 331.35 temperature 20.0 90 < th dose independent sin 5 NA
343 331.36 temperature 20.0 270 < th dose independent sin 7 NA
350 331.41 temperature 20.0 270 < th dose independent rect. 24 8
355 331.44 humidity 50.0 4320 < th dose independent rect. 11 6
358 331.48 humidity 50.0 4320 < th dose independent rect. 9 8
375 331.49 temperature 20.0 90 > th dose independent sin 5 NA
383 331.52 temperature 20.0 90 < th dose independent rect. 2 7
388 331.57 radiation 30.0 4320 < th dose independent rect. 11 2
420 331.65 radiation 30.0 4320 > th dose independent rect. 11 2
450 331.75 temperature 20.0 270 > th dose independent sin 7 NA
458 331.80 radiation 1.0 4320 > th dose independent rect. 6 9
462 331.81 radiation 10.0 4320 > th dose independent rect. 11 7
474 331.82 radiation 10.0 4320 < th dose independent rect. 18 13
475 331.83 humidity 50.0 4320 < th dose independent rect. 15 23
494 331.88 radiation 10.0 4320 < th dose independent rect. 1 6
495 331.88 radiation 1.0 4320 < th dose independent rect. 6 9
500 331.92 radiation 10.0 4320 < th dose independent rect. 4 3
502 331.93 wind 9.0 14400 < th dose dependent rect. 22 4
505 331.95 radiation 10.0 4320 < th dose independent rect. 20 11
508 331.97 radiation 10.0 4320 < th dose independent rect. 22 9
526 332.00 precipitation 0.1 720 > th dose independent rect. 1 1
529 332.00 precipitation 0.1 720 > th dose dependent rect. 1 1
533 332.02 wind 1.0 43200 < th dose dependent rect. 19 2
535 332.03 radiation 10.0 4320 < th dose independent rect. 11 8
536 332.03 radiation 10.0 4320 < th dose independent rect. 11 10
540 332.03 radiation 10.0 4320 < th dose independent rect. 11 16
542 332.03 temperature 20.0 90 < th dose independent rect. 1 21
558 332.11 humidity 90.0 4320 > th dose independent rect. 8 6
575 332.20 radiation 10.0 4320 < th dose dependent sin 16 NA
613 332.27 humidity 50.0 4320 < th dose independent rect. 15 2
614 332.27 wind 3.0 1440 < th dose independent rect. 1 3
632 332.30 radiation 1.0 4320 < th dose dependent rect. 6 9
656 332.35 humidity 50.0 4320 < th dose independent sin 1 NA
680 332.44 humidity 80.0 43200 < th dose independent rect. 16 5
695 332.49 humidity 50.0 4320 < th dose independent rect. 11 23
723 332.52 humidity 50.0 4320 < th dose independent no NA NA
856 332.52 radiation 1.0 4320 < th dose dependent rect. 6 5
898 332.58 wind 3.0 1440 < th dose independent rect. 23 6
904 332.60 radiation 1.0 4320 > th dose independent rect. 6 5
910 332.63 radiation 1.0 4320 < th dose independent rect. 6 5
926 332.69 humidity 50.0 4320 < th dose independent rect. 13 23
929 332.70 radiation 40.0 43200 > th dose independent rect. 15 1
975 332.80 wind 3.0 1440 > th dose independent rect. 23 6
976 332.80 wind 1.0 14400 > th dose dependent rect. 22 4
978 332.81 temperature 20.0 1440 > th dose independent rect. 3 16
979 332.81 temperature 20.0 1440 < th dose independent rect. 3 16
988 332.85 radiation 1.0 4320 > th dose dependent rect. 11 2
990 332.86 wind 5.0 43200 > th dose dependent rect. 20 9