Os01g0296200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os01g0296200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 228.02 | 0.709 | 10.3 | 1.86 | 1.15 | -3.09 | -0.741 | 2.21 | -0.344 | 19.9 | 8.746 | 245 | 10.1 | 16.5 |
| 232.03 | 0.709 | 10.3 | 1.82 | 0.795 | -2.81 | -0.18 | -- | -0.391 | 19.9 | 10.42 | 187 | 10.6 | 17 |
| 228.75 | 0.704 | 10.3 | 1.85 | 1.01 | -2.99 | -- | 1.93 | -0.339 | 19.7 | 9.233 | 230 | 10.2 | 16.6 |
| 230.81 | 0.708 | 10.3 | 1.74 | 0.697 | -2.71 | -- | -- | -0.381 | 19.7 | 11.44 | 185 | 10.6 | 16.9 |
| 231.8 | 0.709 | 10.2 | 1.87 | -- | -2.18 | -- | 1.47 | -0.339 | -- | 16.06 | 136 | 10.9 | 17.4 |
| 313.81 | 0.83 | 10.3 | 1.34 | 1.09 | -- | -0.233 | -- | -0.579 | 7.03 | -- | -- | -- | -- |
| 313.95 | 0.83 | 10.3 | 1.33 | 1.09 | -- | -- | -- | -0.579 | 7.05 | -- | -- | -- | -- |
| 231.16 | 0.708 | 10.3 | 1.69 | -- | -2.14 | -- | -- | -0.356 | -- | 15.26 | 56 | 11.6 | 17.2 |
| 301.55 | 0.809 | 10.4 | -- | 0.639 | -2.37 | -- | -- | -0.599 | 20.8 | 6.24 | 175 | 10.8 | 16.5 |
| 376.87 | 0.907 | 10.3 | 1.35 | -- | -- | -- | -- | -0.559 | -- | -- | -- | -- | -- |
| 360.64 | 0.888 | 10.3 | -- | 1.11 | -- | -- | -- | -0.727 | 6.97 | -- | -- | -- | -- |
| 299.38 | 0.806 | 10.3 | -- | -- | -1.93 | -- | -- | -0.552 | -- | 13.21 | 21 | 11.9 | 17.1 |
| 425.13 | 0.962 | 10.3 | -- | -- | -- | -- | -- | -0.709 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 230.18 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 16 |
| 9 | 235.96 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 12 | 17 |
| 85 | 251.84 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 15 |
| 111 | 254.10 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 17 |
| 121 | 254.71 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 143 | 256.86 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 7 |
| 186 | 258.76 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 10 | 5 |
| 193 | 259.02 | temperature | 30.0 | 270 | < th | dose independent | rect. | 13 | 22 |
| 204 | 259.48 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 7 |
| 206 | 259.54 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 20 |
| 215 | 259.98 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 9 |
| 219 | 260.14 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 11 | 3 |
| 284 | 262.63 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 18 |
| 285 | 262.64 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 17 |
| 317 | 263.77 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 8 |
| 320 | 263.83 | radiation | 10.0 | 10 | < th | dose dependent | sin | 7 | NA |
| 322 | 263.92 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 23 | 6 |
| 385 | 265.70 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 8 |
| 386 | 265.72 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 9 |
| 395 | 265.89 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 403 | 266.08 | radiation | 1.0 | 90 | > th | dose independent | sin | 8 | NA |
| 412 | 266.24 | radiation | 1.0 | 90 | < th | dose independent | sin | 8 | NA |
| 424 | 266.50 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 14 | 19 |
| 426 | 266.53 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 16 |
| 454 | 267.07 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 9 |
| 462 | 267.33 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 18 |
| 469 | 267.52 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 7 |
| 482 | 267.60 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 15 |
| 490 | 267.75 | temperature | 30.0 | 270 | > th | dose independent | rect. | 10 | 5 |
| 491 | 267.75 | temperature | 10.0 | 10 | > th | dose dependent | sin | 18 | NA |
| 498 | 267.86 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 17 |
| 500 | 267.87 | temperature | 30.0 | 270 | > th | dose independent | rect. | 9 | 7 |
| 503 | 267.89 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 23 | 15 |
| 513 | 268.01 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 7 |
| 528 | 268.08 | wind | 7.0 | 270 | < th | dose independent | rect. | 10 | 17 |
| 550 | 268.24 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 15 |
| 581 | 268.37 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 595 | 268.49 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 10 |
| 648 | 269.08 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 679 | 269.37 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 3 |
| 709 | 269.62 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 9 |
| 710 | 269.62 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 15 |
| 711 | 269.62 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 15 |
| 773 | 270.22 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 7 |
| 774 | 270.22 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 7 |
| 792 | 270.31 | temperature | 20.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 814 | 270.53 | wind | 7.0 | 270 | < th | dose independent | rect. | 9 | 7 |
| 822 | 270.62 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 9 |
| 838 | 270.78 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 9 |
| 839 | 270.78 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 9 |
| 848 | 270.84 | temperature | 20.0 | 10 | > th | dose independent | rect. | 24 | 5 |
| 892 | 271.28 | temperature | 30.0 | 270 | > th | dose independent | sin | 3 | NA |
| 896 | 271.31 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 21 |
| 915 | 271.51 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 15 |
| 916 | 271.51 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 936 | 271.76 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 7 |
| 939 | 271.78 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 9 |
| 946 | 271.87 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 7 |
| 947 | 271.87 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 7 |
| 948 | 271.87 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 7 |
| 950 | 271.87 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 17 |
| 960 | 271.99 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 7 |
| 964 | 272.03 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 7 |
| 980 | 272.22 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 17 |
| 988 | 272.27 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 17 |
| 989 | 272.27 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 17 |
| 997 | 272.34 | wind | 9.0 | 270 | < th | dose dependent | rect. | 11 | 3 |