Os01g0296000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0296000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 131.79 | 0.539 | 7.2 | -0.223 | 2.32 | 1.39 | 0.365 | -1.48 | 0.394 | 21.3 | 16.6 | 254 | -- | -- |
| 133.49 | 0.538 | 7.18 | -0.0255 | 2.31 | 1.53 | 0.41 | -- | 0.446 | 21.3 | 14.63 | 266 | -- | -- |
| 132.26 | 0.536 | 7.2 | -0.237 | 2.33 | 1.39 | -- | -1.49 | 0.395 | 21.3 | 16.6 | 245 | -- | -- |
| 133.86 | 0.539 | 7.17 | 0.00581 | 2.32 | 1.48 | -- | -- | 0.463 | 21.3 | 14.2 | 253 | -- | -- |
| 328.34 | 0.844 | 7.16 | -0.491 | -- | 2.62 | -- | -1.61 | 0.314 | -- | 24.2 | 676 | -- | -- |
| 156.45 | 0.586 | 7.13 | 0.335 | 2.49 | -- | 0.373 | -- | 0.673 | 20.7 | -- | -- | -- | -- |
| 156.9 | 0.587 | 7.13 | 0.323 | 2.49 | -- | -- | -- | 0.673 | 20.7 | -- | -- | -- | -- |
| 334.21 | 0.851 | 7.12 | -0.206 | -- | 2.48 | -- | -- | 0.399 | -- | 24.2 | 671 | -- | -- |
| 133.86 | 0.539 | 7.17 | -- | 2.32 | 1.49 | -- | -- | 0.462 | 21.3 | 14.16 | 253 | -- | -- |
| 508.08 | 1.05 | 7.06 | 0.318 | -- | -- | -- | -- | 0.653 | -- | -- | -- | -- | -- |
| 159.66 | 0.591 | 7.14 | -- | 2.49 | -- | -- | -- | 0.637 | 20.7 | -- | -- | -- | -- |
| 335.29 | 0.853 | 7.11 | -- | -- | 2.44 | -- | -- | 0.424 | -- | 24.2 | 670 | -- | -- |
| 510.75 | 1.05 | 7.07 | -- | -- | -- | -- | -- | 0.617 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 116.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 21 |
| 2 | 117.15 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 19 |
| 13 | 120.29 | temperature | 15 | 90 | > th | dose dependent | rect. | 11 | 18 |
| 43 | 124.44 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 17 |
| 81 | 126.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 88 | 126.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 18 |
| 141 | 128.23 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 11 |
| 178 | 129.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 21 |
| 196 | 129.54 | temperature | 10 | 10 | > th | dose dependent | sin | 18 | NA |
| 213 | 129.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 15 |
| 219 | 129.97 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 238 | 130.23 | temperature | 25 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 267 | 130.69 | temperature | 20 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 289 | 130.89 | temperature | 15 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 299 | 130.93 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 307 | 131.03 | temperature | 20 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 357 | 131.34 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 366 | 131.37 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 8 |
| 378 | 131.41 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 2 |
| 448 | 131.54 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 452 | 131.55 | temperature | 25 | 4320 | < th | dose dependent | sin | 13 | NA |
| 477 | 131.60 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 548 | 131.70 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 683 | 131.94 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 708 | 131.97 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 717 | 131.99 | temperature | 10 | 4320 | > th | dose dependent | sin | 11 | NA |
| 720 | 131.99 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 12 |
| 808 | 132.12 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 940 | 132.30 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 20 |
| 965 | 132.32 | wind | 7 | 270 | < th | dose independent | rect. | 9 | 9 |