Os01g0295700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein phosphatase-2C.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0295700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Protein phosphatase-2C.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.51 | 0.34 | 10.8 | 1.21 | 0.33 | -1.93 | -0.383 | -0.417 | 0.299 | 17.7 | 9.708 | 98 | -- | -- |
| 52.62 | 0.338 | 10.8 | 1.27 | 0.331 | -1.94 | -0.459 | -- | 0.315 | 17.7 | 8.202 | 102 | -- | -- |
| 52.79 | 0.338 | 10.8 | 1.19 | 0.339 | -1.96 | -- | -0.637 | 0.294 | 17.4 | 9.935 | 100 | -- | -- |
| 53.11 | 0.339 | 10.8 | 1.28 | 0.336 | -1.98 | -- | -- | 0.319 | 17.5 | 8.187 | 100 | -- | -- |
| 56.51 | 0.352 | 10.8 | 1.13 | -- | -1.69 | -- | -0.5 | 0.257 | -- | 9.935 | 100 | -- | -- |
| 91.27 | 0.448 | 10.8 | 0.883 | 0.337 | -- | 0.16 | -- | 0.0432 | 1.19 | -- | -- | -- | -- |
| 91.36 | 0.448 | 10.8 | 0.877 | 0.336 | -- | -- | -- | 0.0426 | 0.995 | -- | -- | -- | -- |
| 56.72 | 0.352 | 10.8 | 1.2 | -- | -1.7 | -- | -- | 0.276 | -- | 8.187 | 100 | -- | -- |
| 91.71 | 0.448 | 10.8 | -- | 0.118 | -1.37 | -- | -- | 0.108 | 18.5 | 8.187 | 100 | -- | -- |
| 98.39 | 0.463 | 10.8 | 0.89 | -- | -- | -- | -- | 0.0491 | -- | -- | -- | -- | -- |
| 111.65 | 0.494 | 10.8 | -- | 0.351 | -- | -- | -- | -0.0551 | 1.1 | -- | -- | -- | -- |
| 91.79 | 0.448 | 10.8 | -- | -- | -1.08 | -- | -- | 0.101 | -- | 19.6 | 18 | -- | -- |
| 119.28 | 0.51 | 10.8 | -- | -- | -- | -- | -- | -0.0496 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 5 | 51.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 11 | 52.23 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 13 | 52.58 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 15 | 52.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 16 | 52.83 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 18 | 52.89 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 23 | 53.06 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 24 | 53.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 27 | 53.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 50 | 53.98 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 54 | 54.05 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 58 | 54.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 63 | 54.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 113 | 55.31 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 157 | 56.26 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 211 | 57.05 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 304 | 57.94 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 315 | 58.03 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 15 |
| 364 | 58.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 374 | 58.45 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 380 | 58.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 417 | 58.68 | temperature | 15 | 720 | > th | dose dependent | sin | 3 | NA |
| 537 | 59.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 566 | 59.26 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 739 | 59.83 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 769 | 59.92 | temperature | 30 | 90 | < th | dose dependent | sin | 22 | NA |
| 874 | 60.16 | temperature | 30 | 10 | < th | dose dependent | sin | 21 | NA |
| 880 | 60.17 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 16 |
| 900 | 60.23 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 11 |
| 926 | 60.28 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 932 | 60.29 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 951 | 60.36 | temperature | 30 | 720 | < th | dose dependent | sin | 2 | NA |
| 953 | 60.36 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 2 |
| 971 | 60.37 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 995 | 60.41 | temperature | 10 | 10 | > th | dose dependent | sin | 21 | NA |
| 997 | 60.41 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 8 |