Os01g0294700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Haem peroxidase, plant/fungal/bacterial family protein.
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Os01g0294700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Haem peroxidase, plant/fungal/bacterial family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1750.95 | 1.97 | 8.51 | -12.3 | 0.495 | 5.9 | -0.541 | -7.25 | -2.08 | 12.8 | 27.8 | 1232 | 8.92 | -- |
| 1755.71 | 1.95 | 8.37 | -11 | 0.527 | 5.14 | -0.353 | -- | -2.04 | 12.6 | 27.51 | 1229 | 9.9 | -- |
| 1749.07 | 1.95 | 8.54 | -12.3 | 0.552 | 5.84 | -- | -6.49 | -2.27 | 12.6 | 27.42 | 1229 | 9.96 | -- |
| 1756.12 | 1.95 | 8.38 | -11 | 0.534 | 5.14 | -- | -- | -2.08 | 12.4 | 27.48 | 1229 | 10 | -- |
| 1762.82 | 1.96 | 8.54 | -12.4 | -- | 5.69 | -- | -6.88 | -2.18 | -- | 27.8 | 1276 | 10 | -- |
| 2838.09 | 2.5 | 8.45 | -9.55 | 0.532 | -- | 2.53 | -- | -2.4 | 3.96 | -- | -- | -- | -- |
| 2856.43 | 2.5 | 8.45 | -9.58 | 0.555 | -- | -- | -- | -2.42 | 4.34 | -- | -- | -- | -- |
| 1769.22 | 1.96 | 8.36 | -11 | -- | 4.96 | -- | -- | -1.96 | -- | 27.92 | 1278 | 9.66 | -- |
| 4747.84 | 3.21 | 8.03 | -- | 0.394 | 3.48 | -- | -- | -0.649 | 10.7 | 29.19 | 1168 | 6.9 | -- |
| 2872.97 | 2.5 | 8.46 | -9.56 | -- | -- | -- | -- | -2.4 | -- | -- | -- | -- | -- |
| 5274.51 | 3.4 | 8.21 | -- | 0.377 | -- | -- | -- | -1.35 | 4.88 | -- | -- | -- | -- |
| 4749.61 | 3.21 | 8.06 | -- | -- | 3.4 | -- | -- | -0.665 | -- | 30.41 | 1233 | 6.05 | -- |
| 5282 | 3.39 | 8.22 | -- | -- | -- | -- | -- | -1.34 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1814.54 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 17 | 1816.58 | temperature | 30 | 1440 | > th | dose dependent | sin | 16 | NA |
| 37 | 1818.28 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 122 | 1827.03 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 232 | 1830.09 | temperature | 30 | 1440 | > th | dose independent | sin | 14 | NA |
| 234 | 1830.35 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 235 | 1830.63 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 250 | 1830.81 | temperature | 30 | 1440 | < th | dose independent | sin | 14 | NA |
| 264 | 1833.94 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 266 | 1834.06 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 269 | 1834.32 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 276 | 1835.00 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 323 | 1840.06 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 324 | 1840.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 328 | 1840.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 336 | 1840.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 340 | 1840.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 343 | 1841.28 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 379 | 1842.81 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 436 | 1844.45 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 446 | 1845.54 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 466 | 1845.94 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 485 | 1846.41 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 486 | 1846.42 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 526 | 1848.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 529 | 1848.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 533 | 1848.22 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 557 | 1848.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 19 |
| 560 | 1848.35 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 564 | 1848.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 23 |
| 583 | 1848.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 599 | 1848.67 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 632 | 1848.93 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 752 | 1854.25 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 779 | 1855.78 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |