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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0293900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haem peroxidase, plant/fungal/bacterial family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0318) R2 : 0.000302
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0248 (0.0669) R2dN8 : 0.00039 R2N8 : 0.000302
σ : 0.598
deviance : 164.41
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
136.03 0.548 3.06 -0.654 0.0436 0.24 0.553 -1.7 -0.0168 6.32 4.9 11 -- --
140.4 0.552 3.09 -0.575 0.0124 0.543 0.863 -- -0.031 5.49 5.6 11 -- --
136.79 0.545 3.06 -0.654 0.0436 0.24 -- -1.7 -0.0168 6.32 4.9 11 -- --
142.48 0.556 3.09 -0.568 0.0482 0.59 -- -- -0.0338 6.03 5.6 13 -- --
136.83 0.545 3.06 -0.649 -- 0.224 -- -1.86 -0.0141 -- 4.828 11 -- --
145.24 0.565 3.1 -0.694 0.149 -- -1.33 -- -0.0431 16.4 -- -- -- --
149.65 0.573 3.1 -0.703 0.157 -- -- -- -0.0501 14.4 -- -- -- --
142.59 0.556 3.09 -0.567 -- 0.576 -- -- -0.0312 -- 5.5 13 -- --
150.54 0.571 3.09 -- 0.071 0.738 -- -- 0.0186 6 5.599 13 -- --
151.1 0.574 3.1 -0.71 -- -- -- -- -0.054 -- -- -- -- --
162.69 0.597 3.08 -- 0.17 -- -- -- 0.0282 14.4 -- -- -- --
150.72 0.572 3.08 -- -- 0.707 -- -- 0.0326 -- 5.6 13 -- --
164.41 0.598 3.08 -- -- -- -- -- 0.0248 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 133.61 wind 5 10 < th dose independent rect. 12 12
3 134.09 wind 5 10 < th dose independent rect. 1 23
4 134.46 wind 9 10 > th dose independent rect. 18 1
7 134.46 wind 9 10 > th dose dependent rect. 18 1
10 134.60 wind 9 30 > th dose independent rect. 17 9
28 134.63 wind 9 30 > th dose independent rect. 17 5
74 134.95 wind 9 10 < th dose independent sin 11 NA
75 134.97 wind 5 10 > th dose independent rect. 11 16
80 135.28 wind 9 10 > th dose independent sin 14 NA
81 135.33 wind 5 10 < th dose independent sin 18 NA
91 135.36 wind 1 90 > th dose dependent sin 19 NA
95 135.39 wind 9 10 > th dose independent sin 11 NA
96 135.41 wind 5 10 > th dose independent sin 18 NA
98 135.43 wind 9 10 < th dose dependent rect. 12 12
99 135.45 wind 3 10 > th dose dependent rect. 11 16
100 135.46 wind 3 90 > th dose independent rect. 10 8
105 135.52 wind 9 90 < th dose dependent sin 19 NA
129 135.60 wind 3 10 > th dose dependent sin 18 NA
131 135.60 wind 9 30 < th dose dependent rect. 1 23
143 135.65 wind 1 90 > th dose dependent rect. 11 15
148 135.69 wind 9 10 < th dose independent sin 14 NA
149 135.69 wind 5 10 > th dose independent rect. 11 13
167 135.71 wind 3 90 > th dose dependent rect. 11 8
184 135.82 wind 5 10 < th dose independent rect. 5 23
195 135.87 wind 5 10 < th dose independent rect. 12 23
199 135.89 wind 3 90 > th dose dependent rect. 11 11
239 136.10 wind 9 10 < th dose dependent sin 19 NA
243 136.11 wind 3 10 > th dose dependent rect. 11 13
248 136.14 wind 3 10 > th dose dependent rect. 11 11
261 136.17 wind 7 10 > th dose dependent rect. 17 17
268 136.21 wind 5 90 > th dose independent rect. 11 15
276 136.23 wind 5 10 > th dose independent rect. 20 23
286 136.25 wind 7 10 > th dose dependent rect. 17 5
294 136.25 wind 7 10 > th dose dependent rect. 17 12
314 136.28 wind 5 10 > th dose independent rect. 13 23
322 136.30 wind 5 90 > th dose independent rect. 11 11
334 136.34 wind 5 10 > th dose independent rect. 16 23
339 136.37 wind 9 10 > th dose independent rect. 13 6
342 136.37 wind 3 10 > th dose dependent rect. 13 23
376 136.46 wind 9 90 > th dose dependent rect. 17 5
385 136.47 wind 9 90 > th dose dependent rect. 17 17
411 136.53 wind 9 10 > th dose independent rect. 13 9
424 136.53 wind 5 10 < th dose independent rect. 9 15
476 136.62 wind 5 10 > th dose independent rect. 1 23
486 136.64 wind 5 10 > th dose independent no NA NA
491 136.65 wind 5 10 > th dose independent rect. 23 23
493 136.66 wind 5 10 < th dose independent no NA NA
495 136.67 wind 3 720 < th dose independent rect. 9 5
497 136.67 wind 9 270 > th dose independent rect. 12 22
504 136.69 wind 9 90 > th dose independent sin 15 NA
520 136.72 wind 5 10 < th dose independent rect. 17 23
529 136.73 wind 3 10 > th dose dependent rect. 21 22
550 136.77 wind 1 30 > th dose dependent rect. 24 18
569 136.81 wind 5 10 < th dose independent rect. 7 17
574 136.81 wind 5 10 < th dose independent rect. 9 23
583 136.82 wind 3 90 < th dose independent rect. 9 10
586 136.82 wind 5 10 < th dose independent rect. 7 23
599 136.84 wind 3 10 > th dose dependent rect. 16 23
602 136.85 wind 1 90 > th dose dependent rect. 4 15
613 136.88 wind 3 90 < th dose independent rect. 9 14
615 136.88 wind 5 10 < th dose independent rect. 15 23
658 136.96 wind 3 90 > th dose independent rect. 5 13
660 136.96 wind 7 90 < th dose dependent rect. 9 14
668 136.97 wind 9 90 > th dose dependent sin 12 NA
670 136.97 wind 9 270 > th dose dependent rect. 12 22
694 137.01 wind 7 10 < th dose dependent rect. 9 15
697 137.02 wind 3 90 < th dose independent sin 21 NA
704 137.03 wind 9 90 > th dose dependent sin 15 NA
715 137.04 wind 3 10 > th dose dependent rect. 1 23
719 137.05 wind 9 90 > th dose independent rect. 12 14
727 137.05 wind 3 10 > th dose dependent no NA NA
732 137.05 wind 3 10 > th dose dependent rect. 23 23
735 137.06 wind 9 720 < th dose dependent rect. 12 1
746 137.08 wind 9 90 > th dose independent rect. 12 10
786 137.12 wind 3 720 > th dose independent rect. 10 1
843 137.20 wind 9 270 < th dose independent sin 12 NA
853 137.21 wind 5 10 > th dose independent rect. 1 18
880 137.25 wind 7 720 < th dose independent rect. 12 1
881 137.25 wind 9 90 > th dose independent rect. 12 7
890 137.27 temperature 25 720 < th dose independent rect. 10 1
914 137.31 wind 3 90 < th dose dependent rect. 9 10
929 137.32 wind 7 90 < th dose dependent rect. 7 16
964 137.36 wind 1 720 > th dose dependent rect. 8 10
967 137.37 wind 3 720 > th dose independent rect. 8 7
972 137.37 wind 5 10 < th dose independent rect. 12 16