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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0293600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, TTF-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.78 (0.0368) R2 : 0.000109
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0173 (0.0775) R2dN8 : 0.000141 R2N8 : 0.000109
σ : 0.693
deviance : 220.6
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
199.78 0.664 2.79 -0.216 0.154 0.427 0.798 1.76 0.0307 22.5 23.21 785 -- --
207.64 0.671 2.73 0.4 0.11 0.464 0.455 -- 0.204 23.4 23.3 846 -- --
202.08 0.662 2.8 -0.199 0.152 0.419 -- 1.58 0.0295 21.4 23.3 785 -- --
206.47 0.669 2.73 0.413 0.301 0.587 -- -- 0.232 21.7 24.61 784 -- --
203.48 0.664 2.8 -0.157 -- 0.404 -- 1.46 0.0321 -- 23.27 785 -- --
218.61 0.693 2.77 0.223 0.0378 -- -0.48 -- 0.0101 15.5 -- -- -- --
219.02 0.693 2.77 0.215 0.0841 -- -- -- 0.00772 19.5 -- -- -- --
207.53 0.671 2.72 0.445 -- 0.53 -- -- 0.245 -- 23.38 1510 -- --
210.53 0.676 2.75 -- 0.268 0.5 -- -- 0.157 21.4 24.69 784 -- --
219.4 0.692 2.77 0.213 -- -- -- -- 0.00638 -- -- -- -- --
220.23 0.694 2.78 -- 0.0822 -- -- -- -0.0162 19.6 -- -- -- --
211.34 0.677 2.74 -- -- 0.465 -- -- 0.142 -- 22.3 1500 -- --
220.6 0.693 2.78 -- -- -- -- -- -0.0173 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 192.29 wind 5.0 90 > th dose independent rect. 20 7
2 192.31 wind 5.0 90 > th dose independent sin 11 NA
9 192.93 wind 5.0 270 > th dose dependent sin 12 NA
10 193.11 wind 5.0 90 > th dose dependent rect. 17 10
17 193.29 wind 5.0 90 < th dose independent sin 11 NA
21 193.42 wind 5.0 90 > th dose dependent rect. 21 6
44 193.85 atmosphere 1010.0 10 > th dose dependent rect. 10 1
114 195.80 wind 5.0 90 > th dose independent rect. 17 10
115 195.84 wind 7.0 720 > th dose independent rect. 20 13
137 196.18 wind 5.0 90 > th dose independent rect. 17 16
138 196.25 wind 7.0 270 > th dose independent rect. 17 8
182 197.05 temperature 25.0 720 < th dose dependent rect. 10 8
200 197.38 temperature 25.0 720 < th dose dependent rect. 15 2
236 198.44 precipitation 0.1 270 > th dose independent rect. 22 1
237 198.44 precipitation 0.1 270 > th dose dependent rect. 22 1
240 198.49 temperature 20.0 270 < th dose dependent rect. 6 1
244 198.57 wind 7.0 720 > th dose independent rect. 20 2
246 198.61 wind 5.0 90 > th dose dependent rect. 23 4
282 198.91 wind 5.0 10 > th dose dependent rect. 20 2
284 198.92 temperature 25.0 720 < th dose dependent sin 22 NA
297 199.08 atmosphere 1010.0 90 > th dose independent rect. 8 1
298 199.08 atmosphere 1010.0 10 > th dose independent rect. 9 1
353 199.09 wind 5.0 90 > th dose independent rect. 24 3
359 199.11 wind 7.0 30 > th dose independent rect. 17 1
369 199.19 wind 5.0 90 > th dose dependent rect. 1 2
381 199.31 wind 5.0 720 > th dose independent rect. 20 18
383 199.32 wind 5.0 10 > th dose independent rect. 20 2
401 199.39 wind 3.0 10 > th dose dependent rect. 20 14
404 199.42 temperature 20.0 1440 > th dose independent rect. 6 1
418 199.52 wind 3.0 10 > th dose dependent rect. 24 2
420 199.55 wind 5.0 270 < th dose independent rect. 15 13
425 199.61 temperature 25.0 720 < th dose dependent rect. 7 12
436 199.69 humidity 80.0 10 < th dose dependent rect. 22 1
466 199.89 temperature 20.0 1440 < th dose independent rect. 6 1
484 199.99 temperature 25.0 1440 < th dose dependent rect. 13 6
507 200.10 precipitation 0.1 270 > th dose independent rect. 22 3
508 200.10 precipitation 0.1 270 > th dose dependent rect. 22 3
522 200.16 wind 7.0 720 > th dose dependent rect. 20 2
526 200.19 wind 7.0 270 > th dose independent rect. 17 1
641 200.68 atmosphere 1010.0 270 > th dose independent rect. 5 1
661 200.73 wind 5.0 720 < th dose independent rect. 19 18
732 201.17 humidity 80.0 30 < th dose independent rect. 20 2
811 201.58 wind 3.0 10 > th dose independent rect. 2 1
880 201.84 precipitation 0.1 720 > th dose independent rect. 19 2
891 201.89 atmosphere 1015.0 1440 < th dose independent rect. 4 7
921 201.99 temperature 25.0 1440 > th dose independent rect. 16 1
924 201.99 wind 5.0 270 > th dose dependent rect. 13 14
926 202.00 precipitation 0.1 720 > th dose independent rect. 18 5
945 202.07 atmosphere 1015.0 1440 > th dose dependent rect. 3 8
951 202.08 precipitation 0.1 720 > th dose dependent rect. 19 4
952 202.09 wind 7.0 270 > th dose independent rect. 17 5
975 202.13 atmosphere 1015.0 1440 > th dose independent rect. 10 1
979 202.13 atmosphere 1015.0 1440 < th dose independent rect. 9 2
992 202.13 atmosphere 1015.0 1440 > th dose dependent rect. 10 1