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Os01g0292200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.8 (0.0268) R2 : 0.777
β1 : -1.05 (0.0982) R2dD : 0.0579 R2D : 0.0467
β2 : 2.56 (0.0687) R2dC : 0.681 R2C : 0.671
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.407 (0.0572) R2dN8 : 0.0332 R2N8 : 0.0403
σ : 0.504
deviance : 115.87
__
_____
C
peak time of C : 7.65
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
97.67 0.464 13.7 -0.926 3 1.39 0.129 0.836 0.477 9.85 0.02041 223 -- --
99.87 0.465 13.7 -0.856 2.99 1.4 -0.389 -- 0.447 9.85 0.04001 223 -- --
97.69 0.46 13.7 -0.922 3 1.39 -- 0.76 0.476 9.84 0.05 223 -- --
100.81 0.468 13.7 -0.917 3 1.39 -- -- 0.481 9.84 0.05 223 -- --
229.79 0.706 13.9 -1.86 -- 2.15 -- 2.08 -0.0297 -- 1.02 917 -- --
115.84 0.505 13.8 -1.05 2.56 -- -0.0969 -- 0.407 7.65 -- -- -- --
115.87 0.504 13.8 -1.05 2.56 -- -- -- 0.407 7.65 -- -- -- --
149.43 0.569 13.8 -0.956 -- 3.48 -- -- 0.542 -- 1.75 906 -- --
122.67 0.516 13.7 -- 3.03 1.38 -- -- 0.521 9.8 0.04476 219 -- --
467.15 1.01 13.8 -1.01 -- -- -- -- 0.445 -- -- -- -- --
144.84 0.563 13.7 -- 2.55 -- -- -- 0.524 7.68 -- -- -- --
161.36 0.592 13.8 -- -- 3.71 -- -- 0.632 -- 0.1283 936 -- --
494.26 1.04 13.8 -- -- -- -- -- 0.558 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.95 radiation 1.0 270 > th dose independent rect. 14 17
2 84.04 radiation 1.0 270 < th dose independent sin 14 NA
3 84.04 wind 9.0 270 < th dose independent rect. 13 20
5 84.22 wind 1.0 270 > th dose independent rect. 9 4
6 84.39 radiation 1.0 270 < th dose dependent sin 14 NA
9 84.48 humidity 60.0 270 > th dose independent rect. 9 4
10 84.74 wind 3.0 270 > th dose independent rect. 14 4
11 84.74 wind 1.0 270 > th dose dependent rect. 14 4
12 84.81 precipitation 0.1 270 < th dose independent rect. 9 4
13 84.81 precipitation 0.1 270 < th dose dependent rect. 9 4
14 84.86 temperature 10.0 270 > th dose independent rect. 9 4
16 84.86 atmosphere 995.0 270 > th dose independent rect. 9 4
17 84.86 atmosphere 1015.0 270 < th dose independent rect. 9 4
18 84.86 temperature 10.0 270 > th dose independent rect. 13 20
19 84.87 radiation 1.0 270 > th dose independent sin 14 NA
20 84.90 radiation 1.0 270 > th dose independent rect. 13 19
22 85.04 wind 9.0 270 < th dose independent rect. 3 15
23 85.04 wind 9.0 270 < th dose independent rect. 14 18
25 85.16 radiation 1.0 270 > th dose independent rect. 9 4
29 85.26 wind 9.0 270 < th dose independent rect. 9 4
33 85.36 wind 9.0 270 < th dose independent rect. 13 6
34 85.42 wind 9.0 270 < th dose independent rect. 14 4
39 85.56 wind 1.0 270 > th dose independent rect. 8 6
42 85.60 precipitation 0.1 270 < th dose independent rect. 8 6
43 85.60 precipitation 0.1 270 < th dose dependent rect. 8 6
46 85.66 temperature 15.0 270 > th dose independent rect. 19 18
47 85.67 temperature 10.0 270 > th dose independent rect. 8 6
48 85.67 atmosphere 995.0 270 > th dose independent rect. 8 6
49 85.67 atmosphere 1015.0 270 < th dose independent rect. 8 6
50 85.67 temperature 10.0 270 > th dose independent rect. 14 18
52 85.70 wind 9.0 90 < th dose independent rect. 16 17
56 85.85 wind 9.0 270 < th dose independent rect. 13 8
57 85.86 temperature 10.0 270 > th dose independent rect. 13 6
59 85.86 atmosphere 1010.0 270 < th dose independent rect. 13 6
62 85.86 atmosphere 995.0 270 > th dose independent rect. 19 18
63 85.89 atmosphere 995.0 270 > th dose independent rect. 18 20
64 85.90 radiation 1.0 270 < th dose dependent rect. 18 9
67 85.94 temperature 10.0 270 > th dose independent rect. 14 4
69 85.94 atmosphere 1010.0 270 < th dose independent rect. 14 4
72 85.94 temperature 10.0 270 > th dose independent rect. 18 20
75 85.96 temperature 10.0 270 > th dose independent rect. 18 9
76 85.96 humidity 50.0 270 > th dose independent rect. 18 9
77 85.96 radiation 20.0 270 < th dose independent rect. 18 9
80 85.96 temperature 10.0 270 > th dose independent rect. 3 15
81 85.96 atmosphere 1015.0 270 < th dose independent rect. 3 15
85 86.00 wind 9.0 270 < th dose independent rect. 18 9
86 86.00 atmosphere 995.0 270 > th dose independent rect. 18 9
89 86.14 precipitation 0.1 270 < th dose independent rect. 18 20
90 86.14 precipitation 0.1 270 < th dose dependent rect. 18 20
93 86.16 humidity 50.0 270 > th dose independent rect. 19 18
98 86.17 temperature 10.0 90 > th dose independent rect. 16 17
99 86.19 wind 9.0 270 < th dose independent rect. 8 6
102 86.26 wind 9.0 270 < th dose independent rect. 19 18
107 86.27 temperature 15.0 270 > th dose independent rect. 21 16
111 86.29 radiation 1.0 270 > th dose independent rect. 8 6
116 86.34 precipitation 0.1 270 < th dose independent rect. 13 20
117 86.34 precipitation 0.1 270 < th dose dependent rect. 13 20
119 86.35 precipitation 0.1 270 < th dose independent rect. 19 18
121 86.35 precipitation 0.1 270 < th dose dependent rect. 19 18
124 86.38 temperature 10.0 270 > th dose independent rect. 13 8
126 86.38 atmosphere 995.0 270 > th dose independent rect. 21 16
128 86.44 radiation 1.0 270 > th dose independent rect. 15 2
129 86.45 atmosphere 1015.0 270 < th dose independent rect. 13 8
136 86.55 wind 9.0 270 < th dose independent rect. 18 20
137 86.58 radiation 1.0 270 > th dose independent rect. 14 4
142 86.67 precipitation 0.1 270 < th dose independent rect. 14 4
144 86.67 precipitation 0.1 270 < th dose dependent rect. 14 4
147 86.74 humidity 90.0 270 < th dose independent rect. 15 2
151 86.77 precipitation 0.1 270 < th dose independent rect. 18 9
152 86.77 precipitation 0.1 270 < th dose dependent rect. 18 9
154 86.79 wind 1.0 10 > th dose independent rect. 9 7
155 86.80 radiation 40.0 90 < th dose independent rect. 16 17
156 86.80 precipitation 0.1 270 < th dose independent rect. 14 18
158 86.80 precipitation 0.1 270 < th dose dependent rect. 14 18
166 86.85 wind 1.0 270 > th dose independent rect. 13 8
168 86.87 wind 9.0 270 < th dose independent rect. 21 16
169 86.88 precipitation 0.1 270 < th dose independent rect. 13 6
170 86.88 precipitation 0.1 270 < th dose dependent rect. 13 6
175 86.91 temperature 10.0 270 > th dose dependent rect. 13 8
187 86.94 temperature 10.0 90 > th dose dependent rect. 15 6
192 87.04 precipitation 0.1 270 < th dose independent rect. 21 16
193 87.04 precipitation 0.1 270 < th dose dependent rect. 21 16
194 87.06 humidity 50.0 270 > th dose independent rect. 21 16
196 87.07 wind 9.0 10 < th dose independent rect. 16 17
202 87.14 temperature 10.0 270 > th dose dependent rect. 9 4
210 87.19 radiation 40.0 90 < th dose independent rect. 15 6
216 87.23 temperature 30.0 270 < th dose independent rect. 18 9
229 87.31 radiation 40.0 270 < th dose independent rect. 14 4
243 87.39 temperature 10.0 270 > th dose independent rect. 15 2
245 87.39 atmosphere 1010.0 270 < th dose independent rect. 15 2
247 87.39 temperature 10.0 270 > th dose independent rect. 17 22
250 87.41 temperature 10.0 10 > th dose independent rect. 9 7
252 87.41 atmosphere 1015.0 10 < th dose independent rect. 9 7
253 87.41 precipitation 0.1 10 < th dose independent rect. 9 7
254 87.41 temperature 10.0 10 > th dose independent rect. 16 17
255 87.41 precipitation 0.1 10 < th dose dependent rect. 9 7
258 87.42 precipitation 0.1 90 < th dose independent rect. 16 17
261 87.42 precipitation 0.1 90 < th dose dependent rect. 16 17
262 87.43 radiation 40.0 270 < th dose independent rect. 15 2
276 87.47 precipitation 0.1 90 < th dose independent rect. 21 18
277 87.47 precipitation 0.1 90 < th dose dependent rect. 21 18
303 87.62 humidity 90.0 270 < th dose independent rect. 14 4
304 87.63 atmosphere 995.0 90 > th dose independent rect. 16 17
306 87.65 precipitation 0.1 270 < th dose independent rect. 3 15
307 87.65 precipitation 0.1 270 < th dose dependent rect. 3 15
312 87.69 precipitation 0.1 270 < th dose independent rect. 17 22
313 87.69 precipitation 0.1 270 < th dose dependent rect. 17 22
316 87.71 precipitation 0.1 270 < th dose independent rect. 15 2
318 87.71 precipitation 0.1 270 < th dose dependent rect. 15 2
324 87.81 radiation 1.0 270 > th dose dependent rect. 15 17
328 87.86 humidity 90.0 270 < th dose independent rect. 9 4
331 87.88 atmosphere 995.0 10 > th dose independent rect. 9 7
339 87.95 humidity 50.0 10 > th dose independent rect. 9 7
344 87.97 wind 1.0 90 > th dose independent rect. 21 18
355 88.06 precipitation 0.1 270 < th dose independent rect. 13 8
356 88.06 precipitation 0.1 270 < th dose dependent rect. 13 8
361 88.11 temperature 10.0 270 > th dose dependent rect. 15 2
377 88.25 atmosphere 1015.0 270 < th dose independent rect. 13 20
378 88.27 atmosphere 995.0 270 > th dose independent rect. 13 20
411 88.40 atmosphere 1015.0 90 < th dose independent rect. 16 17
416 88.43 atmosphere 1015.0 270 < th dose independent rect. 14 18
420 88.46 radiation 1.0 270 < th dose dependent rect. 11 16
428 88.49 atmosphere 995.0 270 > th dose independent rect. 14 18
433 88.51 temperature 10.0 1440 > th dose independent rect. 10 7
436 88.51 temperature 10.0 1440 > th dose independent rect. 17 17
454 88.56 radiation 1.0 270 < th dose independent rect. 11 16
482 88.77 atmosphere 995.0 10 > th dose independent rect. 16 17
497 88.86 temperature 10.0 10 > th dose dependent rect. 16 6
544 89.03 humidity 50.0 10 > th dose independent rect. 16 17
558 89.15 wind 1.0 270 > th dose independent rect. 19 19
559 89.16 wind 1.0 270 > th dose independent rect. 18 9
568 89.21 atmosphere 995.0 270 > th dose independent rect. 13 6
569 89.21 atmosphere 1015.0 10 < th dose independent rect. 16 17
587 89.28 atmosphere 995.0 270 > th dose independent rect. 14 4
601 89.29 precipitation 0.1 10 < th dose independent rect. 16 5
602 89.29 precipitation 0.1 10 < th dose dependent rect. 16 5
605 89.34 temperature 10.0 270 > th dose independent rect. 1 8
607 89.34 humidity 50.0 270 > th dose independent rect. 1 8
608 89.34 atmosphere 995.0 270 > th dose independent rect. 1 8
609 89.34 atmosphere 1015.0 270 < th dose independent rect. 1 8
610 89.34 temperature 10.0 270 > th dose independent rect. 9 16
613 89.35 wind 9.0 270 < th dose independent rect. 1 8
633 89.48 radiation 1.0 270 < th dose dependent rect. 6 21
644 89.52 temperature 15.0 10 > th dose independent rect. 21 19
645 89.53 temperature 30.0 270 < th dose independent rect. 1 8
666 89.62 wind 9.0 10 < th dose independent rect. 16 5
667 89.62 atmosphere 995.0 90 > th dose independent rect. 15 6
678 89.68 temperature 10.0 10 > th dose dependent rect. 16 17
682 89.71 wind 1.0 10 > th dose independent rect. 16 5
733 89.89 precipitation 0.1 270 < th dose independent rect. 1 8
736 89.89 precipitation 0.1 270 < th dose dependent rect. 1 8
744 89.92 temperature 10.0 10 > th dose independent rect. 16 5
746 89.92 atmosphere 1010.0 10 < th dose independent rect. 16 5
748 89.92 radiation 30.0 10 < th dose independent rect. 16 5
764 89.99 precipitation 0.1 270 < th dose independent rect. 9 16
766 89.99 precipitation 0.1 270 < th dose dependent rect. 9 16
774 90.03 temperature 30.0 270 < th dose independent rect. 9 5
781 90.04 atmosphere 1015.0 270 < th dose dependent rect. 14 4
793 90.08 atmosphere 995.0 10 > th dose independent rect. 21 19
803 90.13 atmosphere 1015.0 270 < th dose dependent rect. 15 2
842 90.23 radiation 40.0 270 < th dose independent rect. 9 5
844 90.23 precipitation 0.1 270 < th dose independent rect. 9 14
848 90.23 precipitation 0.1 270 < th dose dependent rect. 9 14
862 90.30 temperature 10.0 270 > th dose independent rect. 23 10
863 90.30 humidity 50.0 270 > th dose independent rect. 23 10
864 90.30 atmosphere 995.0 270 > th dose independent rect. 23 10
865 90.30 temperature 10.0 270 > th dose independent rect. 9 14
868 90.31 wind 9.0 270 < th dose independent rect. 23 10
869 90.31 wind 1.0 270 > th dose independent rect. 9 16
884 90.39 atmosphere 995.0 270 > th dose independent rect. 15 2
900 90.45 humidity 50.0 10 > th dose independent rect. 21 19
921 90.55 temperature 30.0 270 < th dose independent rect. 23 10
947 90.62 temperature 10.0 10 > th dose dependent rect. 9 7
955 90.66 radiation 1.0 270 > th dose dependent sin 13 NA
956 90.66 radiation 1.0 270 > th dose dependent rect. 15 2
960 90.69 precipitation 0.1 10 < th dose independent rect. 21 19
961 90.69 precipitation 0.1 10 < th dose dependent rect. 21 19
967 90.73 radiation 40.0 270 < th dose independent rect. 1 8
975 90.76 humidity 90.0 90 < th dose independent rect. 9 7
997 90.83 atmosphere 995.0 270 > th dose independent rect. 3 15