Os01g0290700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CjMDR1.
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Os01g0290700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CjMDR1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 153.06 | 0.581 | 8.95 | -2.77 | 1.22 | -1.3 | 0.79 | 0.954 | -0.117 | 0.566 | 24.4 | 10 | -- | -- |
| 153.47 | 0.577 | 8.97 | -2.88 | 1.24 | -1.21 | 0.645 | -- | -0.142 | 0.578 | 24.49 | 10 | -- | -- |
| 155.25 | 0.58 | 8.97 | -2.91 | 1.22 | -1.26 | -- | 0.00114 | -0.155 | 0.54 | 24.44 | 10 | -- | -- |
| 155.24 | 0.58 | 8.97 | -2.91 | 1.22 | -1.27 | -- | -- | -0.156 | 0.545 | 24.5 | 10 | -- | -- |
| 222.36 | 0.695 | 8.91 | -2.57 | -- | -2.37 | -- | 1.27 | 0.0214 | -- | 24.24 | 2 | -- | -- |
| 175.98 | 0.622 | 9 | -3.08 | 1.66 | -- | 0.949 | -- | -0.285 | 1.22 | -- | -- | -- | -- |
| 179.7 | 0.628 | 9 | -3.12 | 1.66 | -- | -- | -- | -0.291 | 1.22 | -- | -- | -- | -- |
| 223.72 | 0.697 | 8.92 | -2.73 | -- | -2.25 | -- | -- | -0.0174 | -- | 24.2 | 2 | -- | -- |
| 364.62 | 0.889 | 8.86 | -- | 0.961 | -2.06 | -- | -- | 0.329 | 23.9 | 22.41 | 27 | -- | -- |
| 350.19 | 0.874 | 8.97 | -3.05 | -- | -- | -- | -- | -0.257 | -- | -- | -- | -- | -- |
| 435.61 | 0.976 | 8.92 | -- | 1.61 | -- | -- | -- | 0.0564 | 1.14 | -- | -- | -- | -- |
| 406.76 | 0.939 | 8.81 | -- | -- | -2.75 | -- | -- | 0.458 | -- | 21.4 | 8 | -- | -- |
| 595.88 | 1.14 | 8.9 | -- | -- | -- | -- | -- | 0.0817 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 145.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 11 |
| 2 | 146.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 14 | 147.83 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 10 |
| 29 | 148.51 | temperature | 30 | 10 | < th | dose dependent | sin | 22 | NA |
| 49 | 149.12 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 10 |
| 61 | 149.44 | temperature | 20 | 10 | > th | dose dependent | sin | 23 | NA |
| 112 | 150.37 | temperature | 10 | 10 | > th | dose dependent | sin | 23 | NA |
| 156 | 151.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 172 | 151.38 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 10 |
| 213 | 152.08 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 240 | 152.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 11 |
| 275 | 152.65 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 17 |
| 281 | 152.68 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 294 | 152.79 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 4 |
| 316 | 152.96 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 324 | 153.02 | temperature | 25 | 90 | > th | dose independent | sin | 23 | NA |
| 327 | 153.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 335 | 153.06 | temperature | 25 | 90 | < th | dose independent | sin | 23 | NA |
| 354 | 153.18 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 372 | 153.24 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 376 | 153.27 | temperature | 25 | 10 | < th | dose independent | sin | 22 | NA |
| 377 | 153.27 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 381 | 153.27 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 384 | 153.28 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 11 |
| 388 | 153.30 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 391 | 153.31 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 2 |
| 536 | 153.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 15 |
| 560 | 154.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 585 | 154.17 | temperature | 25 | 10 | > th | dose independent | sin | 22 | NA |
| 602 | 154.24 | temperature | 25 | 90 | < th | dose independent | rect. | 10 | 11 |
| 635 | 154.37 | temperature | 25 | 10 | < th | dose independent | rect. | 10 | 10 |
| 645 | 154.42 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 5 |
| 732 | 154.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 14 |
| 762 | 155.00 | temperature | 25 | 90 | < th | dose independent | rect. | 10 | 9 |
| 787 | 155.11 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 15 |
| 883 | 155.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 7 |
| 929 | 155.65 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 17 |