Os01g0287600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Seed chitinase-c.
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Os01g0287600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Seed chitinase-c.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 171.81 | 0.616 | 9.71 | -0.436 | 0.513 | 0.721 | -0.598 | 0.254 | -0.687 | 23.1 | 89 | 223 | -- | -- |
| 171.39 | 0.61 | 9.71 | -0.422 | 0.483 | 0.717 | -0.58 | -- | -0.676 | 23.1 | 89 | 162 | -- | -- |
| 173.2 | 0.613 | 9.71 | -0.395 | 0.519 | 0.683 | -- | 0.103 | -0.689 | 23.5 | 89.16 | 220 | -- | -- |
| 172.76 | 0.612 | 9.71 | -0.394 | 0.487 | 0.664 | -- | -- | -0.687 | 23.5 | 89 | 161 | -- | -- |
| 183.92 | 0.632 | 9.69 | -0.382 | -- | 0.778 | -- | -0.204 | -0.636 | -- | 88 | 46 | -- | -- |
| 182.91 | 0.634 | 9.74 | -0.325 | 0.674 | -- | -0.0967 | -- | -0.804 | 1.39 | -- | -- | -- | -- |
| 182.95 | 0.633 | 9.74 | -0.322 | 0.675 | -- | -- | -- | -0.803 | 1.43 | -- | -- | -- | -- |
| 184.07 | 0.632 | 9.69 | -0.41 | -- | 0.781 | -- | -- | -0.646 | -- | 88 | 43 | -- | -- |
| 176.79 | 0.619 | 9.71 | -- | 0.486 | 0.61 | -- | -- | -0.654 | 23.7 | 89 | 151 | -- | -- |
| 210.92 | 0.679 | 9.73 | -0.295 | -- | -- | -- | -- | -0.789 | -- | -- | -- | -- | -- |
| 185.68 | 0.637 | 9.73 | -- | 0.669 | -- | -- | -- | -0.768 | 1.41 | -- | -- | -- | -- |
| 188.44 | 0.639 | 9.68 | -- | -- | 0.745 | -- | -- | -0.605 | -- | 88 | 43 | -- | -- |
| 213.22 | 0.682 | 9.72 | -- | -- | -- | -- | -- | -0.756 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 158.56 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 9 | 18 |
| 2 | 159.34 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 12 | 8 |
| 15 | 161.70 | radiation | 10.0 | 30 | < th | dose independent | rect. | 9 | 18 |
| 24 | 162.36 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 12 | 18 |
| 32 | 162.77 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 14 | 16 |
| 35 | 162.83 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 18 | 12 |
| 36 | 162.85 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 12 | 18 |
| 38 | 162.89 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 19 | 11 |
| 46 | 163.20 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 12 | 6 |
| 64 | 163.48 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 65 | 163.48 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 18 |
| 67 | 163.52 | temperature | 25.0 | 30 | > th | dose independent | rect. | 12 | 8 |
| 84 | 163.88 | humidity | 70.0 | 10 | > th | dose independent | rect. | 13 | 14 |
| 86 | 163.91 | radiation | 10.0 | 30 | > th | dose independent | rect. | 12 | 6 |
| 104 | 163.99 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 15 | 12 |
| 139 | 164.36 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 6 |
| 141 | 164.38 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 2 |
| 158 | 164.62 | temperature | 25.0 | 720 | > th | dose independent | rect. | 20 | 3 |
| 159 | 164.62 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 20 | 7 |
| 160 | 164.62 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 20 | 16 |
| 162 | 164.63 | temperature | 25.0 | 90 | < th | dose independent | sin | 12 | NA |
| 170 | 164.72 | radiation | 10.0 | 30 | > th | dose dependent | rect. | 12 | 21 |
| 183 | 164.91 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 12 | 12 |
| 185 | 164.93 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 12 | 8 |
| 186 | 164.95 | radiation | 20.0 | 90 | < th | dose independent | rect. | 13 | 14 |
| 202 | 165.11 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 17 | 10 |
| 204 | 165.13 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 211 | 165.18 | atmosphere | 1010.0 | 90 | < th | dose dependent | sin | 14 | NA |
| 241 | 165.40 | humidity | 70.0 | 10 | < th | dose independent | rect. | 12 | 8 |
| 264 | 165.51 | temperature | 25.0 | 720 | < th | dose independent | rect. | 16 | 7 |
| 269 | 165.55 | temperature | 25.0 | 270 | < th | dose independent | rect. | 16 | 13 |
| 295 | 165.62 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 16 |
| 316 | 165.76 | wind | 7.0 | 10 | < th | dose independent | rect. | 12 | 8 |
| 331 | 165.78 | atmosphere | 1010.0 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 366 | 166.13 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 20 | 11 |
| 415 | 166.30 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 422 | 166.37 | temperature | 25.0 | 720 | > th | dose independent | rect. | 16 | 9 |
| 424 | 166.37 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 445 | 166.42 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 15 | 2 |
| 486 | 166.49 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 15 | 10 |
| 495 | 166.58 | temperature | 25.0 | 90 | > th | dose independent | rect. | 18 | 13 |
| 500 | 166.65 | temperature | 25.0 | 270 | > th | dose independent | rect. | 20 | 12 |
| 505 | 166.68 | wind | 7.0 | 10 | < th | dose independent | rect. | 12 | 18 |
| 531 | 166.82 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 15 | 12 |
| 537 | 166.85 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 10 |
| 546 | 166.88 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 12 | 21 |
| 550 | 166.90 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 20 | 11 |
| 578 | 167.03 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 1 |
| 610 | 167.14 | temperature | 25.0 | 90 | > th | dose independent | rect. | 20 | 7 |
| 651 | 167.29 | wind | 9.0 | 10 | < th | dose dependent | rect. | 12 | 8 |
| 658 | 167.31 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 22 | 14 |
| 661 | 167.32 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 683 | 167.44 | wind | 1.0 | 10 | > th | dose independent | rect. | 12 | 18 |
| 697 | 167.52 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 12 | 12 |
| 726 | 167.60 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 18 | 13 |
| 755 | 167.69 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 14 |
| 777 | 167.73 | humidity | 80.0 | 30 | < th | dose independent | rect. | 12 | 5 |
| 876 | 168.08 | temperature | 25.0 | 270 | > th | dose independent | rect. | 12 | 1 |
| 901 | 168.17 | radiation | 40.0 | 270 | > th | dose independent | rect. | 12 | 1 |
| 902 | 168.17 | temperature | 30.0 | 270 | < th | dose independent | rect. | 13 | 12 |
| 903 | 168.17 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 10 | 7 |
| 913 | 168.21 | radiation | 1.0 | 30 | > th | dose independent | rect. | 6 | 6 |
| 914 | 168.21 | radiation | 30.0 | 270 | < th | dose independent | rect. | 13 | 12 |
| 949 | 168.33 | temperature | 25.0 | 30 | > th | dose independent | rect. | 12 | 5 |
| 954 | 168.35 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 20 | 16 |
| 956 | 168.35 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 13 | 5 |
| 958 | 168.35 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 20 | 16 |
| 960 | 168.35 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 23 |