Os01g0286600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Plastidal protoporphyrinogen oxidase.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0286600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Plastidal protoporphyrinogen oxidase.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.74 | 0.479 | 11.6 | -0.329 | 1.44 | -0.996 | -0.298 | -0.475 | -0.603 | 19.5 | 29.39 | 1736 | -- | -- |
| 103.97 | 0.475 | 11.6 | -0.377 | 1.43 | -1.02 | -0.426 | -- | -0.611 | 19.5 | 29.4 | 1739 | -- | -- |
| 103.83 | 0.475 | 11.6 | -0.321 | 1.44 | -0.993 | -- | -0.477 | -0.622 | 19.5 | 29.3 | 1732 | -- | -- |
| 103.88 | 0.475 | 11.6 | -0.431 | 1.43 | -1.05 | -- | -- | -0.644 | 19.5 | 29.21 | 1732 | -- | -- |
| 204.13 | 0.665 | 11.5 | -0.0538 | -- | -0.828 | -- | -0.21 | -0.472 | -- | 29.62 | 576 | -- | -- |
| 143.71 | 0.562 | 11.6 | -0.143 | 1.55 | -- | -0.225 | -- | -0.556 | 19.5 | -- | -- | -- | -- |
| 143.84 | 0.562 | 11.6 | -0.137 | 1.54 | -- | -- | -- | -0.556 | 19.5 | -- | -- | -- | -- |
| 146.82 | 0.564 | 11.6 | -0.54 | -- | -1.72 | -- | -- | -0.781 | -- | 27.74 | 569 | -- | -- |
| 108.6 | 0.485 | 11.6 | -- | 1.44 | -0.962 | -- | -- | -0.62 | 19.5 | 29.1 | 1733 | -- | -- |
| 271.38 | 0.77 | 11.6 | -0.161 | -- | -- | -- | -- | -0.581 | -- | -- | -- | -- | -- |
| 144.34 | 0.562 | 11.6 | -- | 1.55 | -- | -- | -- | -0.541 | 19.5 | -- | -- | -- | -- |
| 153.73 | 0.577 | 11.6 | -- | -- | -1.69 | -- | -- | -0.729 | -- | 28.18 | 565 | -- | -- |
| 272.07 | 0.77 | 11.6 | -- | -- | -- | -- | -- | -0.563 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.89 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 22 | 20 |
| 16 | 104.61 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 7 | 11 |
| 25 | 104.80 | temperature | 25.0 | 270 | > th | dose dependent | sin | 0 | NA |
| 33 | 105.02 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 46 | 105.19 | temperature | 25.0 | 270 | > th | dose dependent | no | NA | NA |
| 58 | 105.27 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 114 | 105.77 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 176 | 106.55 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 198 | 106.77 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 224 | 107.10 | temperature | 25.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 243 | 107.42 | wind | 9.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 250 | 107.47 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 266 | 107.80 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 10 | 10 |
| 272 | 107.83 | wind | 9.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 281 | 107.89 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 285 | 107.92 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 300 | 107.98 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 306 | 108.02 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 22 | NA |
| 341 | 108.14 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 348 | 108.16 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 365 | 108.22 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 378 | 108.26 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 432 | 108.43 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 482 | 108.54 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 496 | 108.57 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 528 | 108.62 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 532 | 108.63 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 548 | 108.68 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 562 | 108.71 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 14 | 11 |
| 586 | 108.76 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 591 | 108.78 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 626 | 108.88 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 629 | 108.90 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 632 | 108.91 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 642 | 108.95 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 677 | 109.09 | wind | 7.0 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 753 | 109.29 | wind | 9.0 | 43200 | < th | dose independent | rect. | 11 | 10 |
| 787 | 109.40 | temperature | 20.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 809 | 109.47 | wind | 7.0 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 822 | 109.51 | wind | 7.0 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 862 | 109.58 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 880 | 109.64 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 900 | 109.70 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 20 |
| 903 | 109.71 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 906 | 109.71 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 14 |
| 910 | 109.71 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 11 | 10 |
| 928 | 109.74 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 929 | 109.74 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 946 | 109.81 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 960 | 109.85 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 990 | 109.92 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 998 | 109.95 | wind | 9.0 | 43200 | > th | dose independent | rect. | 11 | 10 |