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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0285200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Typical P-type R2R3 Myb protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0363) R2 : 2.53e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0082 (0.0763) R2dN8 : 3.27e-05 R2N8 : 2.53e-05
σ : 0.683
deviance : 213.94
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
207.41 0.677 2.86 0.0573 0.0509 0.212 0.0991 1.25 0.0392 4.99 51 5383 -- --
207.36 0.671 2.87 0.00473 0.0431 0.543 0.108 -- 0.0682 4.84 40 5266 -- --
207.31 0.671 2.86 0.0554 0.0496 0.234 -- 1.23 0.04 4.4 50 5359 -- --
207.3 0.671 2.88 -0.00222 0.0505 0.554 -- -- 0.0469 4.21 35.04 5352 -- --
207.45 0.671 2.86 0.0516 -- 0.253 -- 1.19 0.0405 -- 49.84 5359 -- --
212.8 0.684 2.89 0.185 0.0573 -- 0.121 -- 0.0115 3.07 -- -- -- --
212.84 0.683 2.89 0.182 0.0579 -- -- -- 0.0108 3.15 -- -- -- --
207.48 0.671 2.88 -0.0025 -- 0.538 -- -- 0.0278 -- 36.24 5330 -- --
207.25 0.671 2.88 -- 0.0653 0.539 -- -- 0.0267 4.4 36 5254 -- --
213.04 0.682 2.89 0.185 -- -- -- -- 0.0123 -- -- -- -- --
213.72 0.684 2.89 -- 0.0615 -- -- -- -0.00952 3.15 -- -- -- --
207.48 0.671 2.88 -- -- 0.537 -- -- 0.0278 -- 36.74 5325 -- --
213.94 0.683 2.89 -- -- -- -- -- -0.0082 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 201.77 precipitation 0.1 10 > th dose independent rect. 19 7
5 201.77 precipitation 0.1 10 > th dose dependent rect. 19 7
9 201.95 precipitation 0.1 10 > th dose independent rect. 21 5
13 201.95 precipitation 0.1 10 > th dose dependent rect. 21 5
25 202.81 atmosphere 1015.0 720 < th dose independent rect. 22 19
26 202.88 atmosphere 1015.0 720 < th dose independent rect. 22 11
27 203.05 atmosphere 1015.0 720 < th dose independent rect. 21 13
29 203.18 atmosphere 1015.0 720 < th dose independent rect. 21 21
30 203.28 atmosphere 1015.0 720 < th dose independent rect. 22 3
35 203.78 precipitation 0.1 90 > th dose independent rect. 1 2
36 203.78 precipitation 0.1 90 > th dose dependent rect. 1 2
40 203.83 precipitation 0.1 10 > th dose independent rect. 1 1
50 203.83 precipitation 0.1 10 > th dose dependent rect. 1 1
64 203.91 atmosphere 1015.0 720 < th dose independent rect. 6 19
65 203.94 atmosphere 1015.0 90 < th dose independent rect. 23 12
72 204.10 atmosphere 1015.0 270 < th dose independent rect. 13 12
73 204.14 atmosphere 1015.0 90 < th dose independent rect. 15 12
74 204.15 humidity 80.0 30 < th dose dependent rect. 19 1
76 204.17 atmosphere 1015.0 720 < th dose independent rect. 13 21
80 204.26 humidity 90.0 90 > th dose independent rect. 24 1
96 204.60 radiation 1.0 720 < th dose dependent rect. 18 11
101 204.63 wind 1.0 90 < th dose dependent rect. 20 1
105 204.65 atmosphere 1000.0 90 < th dose independent rect. 24 2
107 204.66 humidity 90.0 90 > th dose dependent rect. 24 1
108 204.67 atmosphere 1000.0 90 < th dose dependent rect. 24 2
109 204.69 humidity 80.0 30 < th dose dependent rect. 19 11
111 204.70 atmosphere 1000.0 10 < th dose independent rect. 1 1
118 204.70 atmosphere 1000.0 10 < th dose dependent rect. 1 1
126 204.72 atmosphere 1015.0 10 < th dose independent rect. 23 11
127 204.73 atmosphere 1015.0 720 < th dose independent rect. 12 14
130 204.74 humidity 80.0 30 < th dose dependent rect. 19 9
183 204.81 humidity 80.0 30 < th dose dependent rect. 19 7
193 204.88 humidity 80.0 30 < th dose dependent rect. 19 5
204 204.95 precipitation 0.1 720 < th dose independent rect. 21 5
206 204.95 precipitation 0.1 720 < th dose dependent rect. 21 5
207 204.96 temperature 30.0 720 < th dose independent rect. 6 3
208 204.96 radiation 1.0 720 < th dose dependent rect. 18 3
214 205.00 wind 7.0 720 < th dose independent rect. 21 13
223 205.05 wind 7.0 720 < th dose independent rect. 17 5
229 205.08 temperature 30.0 720 < th dose independent rect. 22 11
241 205.20 wind 7.0 720 < th dose independent rect. 21 5
245 205.21 wind 5.0 720 < th dose independent rect. 6 3
247 205.22 radiation 10.0 720 < th dose independent rect. 17 5
248 205.23 temperature 20.0 90 > th dose independent rect. 22 13
249 205.24 temperature 20.0 720 > th dose independent rect. 13 5
250 205.24 atmosphere 995.0 720 > th dose independent rect. 18 19
259 205.25 atmosphere 995.0 720 > th dose independent rect. 18 3
264 205.28 wind 7.0 720 < th dose independent rect. 22 11
267 205.29 radiation 30.0 720 < th dose dependent rect. 17 5
270 205.30 wind 7.0 270 < th dose independent rect. 17 12
285 205.37 precipitation 0.1 720 < th dose independent rect. 1 5
289 205.37 precipitation 0.1 720 < th dose dependent rect. 1 5
294 205.44 wind 9.0 720 < th dose dependent rect. 6 3
296 205.46 atmosphere 995.0 720 > th dose independent rect. 18 11
300 205.50 wind 1.0 270 > th dose independent rect. 9 12
303 205.52 radiation 40.0 720 < th dose independent rect. 6 3
306 205.57 temperature 25.0 90 < th dose independent rect. 20 1
307 205.57 wind 7.0 720 < th dose independent rect. 18 3
308 205.57 precipitation 0.1 720 < th dose independent rect. 1 13
309 205.57 precipitation 0.1 720 < th dose dependent rect. 1 13
310 205.58 wind 7.0 720 < th dose independent rect. 5 5
314 205.63 radiation 1.0 720 < th dose independent rect. 18 11
316 205.63 wind 9.0 720 < th dose independent rect. 2 19
317 205.63 wind 9.0 720 < th dose independent rect. 10 19
320 205.64 radiation 40.0 720 < th dose independent rect. 22 11
321 205.65 humidity 50.0 720 > th dose independent rect. 17 5
322 205.67 precipitation 0.1 720 < th dose independent rect. 9 5
324 205.67 precipitation 0.1 720 < th dose dependent rect. 9 5
329 205.68 wind 5.0 90 > th dose dependent rect. 12 2
331 205.69 wind 9.0 270 < th dose independent rect. 5 12
339 205.72 temperature 15.0 720 > th dose independent rect. 9 21
342 205.74 temperature 10.0 270 > th dose independent rect. 5 12
343 205.74 temperature 10.0 270 > th dose independent rect. 17 12
344 205.74 atmosphere 1015.0 270 < th dose independent rect. 5 12
345 205.74 radiation 20.0 270 < th dose independent rect. 17 12
348 205.74 temperature 25.0 90 < th dose dependent rect. 21 1
350 205.75 wind 9.0 720 < th dose independent rect. 9 5
354 205.76 temperature 15.0 720 > th dose independent rect. 1 5
355 205.76 temperature 15.0 720 > th dose independent rect. 18 19
357 205.77 temperature 10.0 720 > th dose independent rect. 5 5
358 205.77 atmosphere 995.0 720 > th dose independent rect. 5 5
359 205.77 atmosphere 1015.0 720 < th dose independent rect. 5 5
361 205.77 temperature 10.0 720 > th dose independent rect. 10 19
364 205.78 temperature 15.0 720 > th dose independent rect. 18 3
367 205.78 temperature 30.0 720 < th dose independent rect. 1 5
368 205.78 humidity 50.0 720 > th dose independent rect. 1 5
371 205.78 atmosphere 995.0 720 > th dose independent rect. 1 5
372 205.78 radiation 20.0 720 < th dose independent rect. 1 5
377 205.78 temperature 10.0 720 > th dose independent rect. 6 19
378 205.79 wind 1.0 720 > th dose independent rect. 10 3
379 205.79 wind 9.0 720 < th dose independent rect. 1 5
381 205.79 temperature 10.0 720 > th dose independent rect. 17 5
382 205.79 atmosphere 1015.0 720 < th dose independent rect. 1 5
383 205.79 radiation 30.0 720 < th dose independent rect. 17 5
385 205.79 temperature 10.0 270 > th dose independent rect. 9 12
386 205.79 temperature 10.0 270 > th dose independent rect. 21 12
387 205.79 humidity 50.0 270 > th dose independent rect. 21 12
388 205.79 atmosphere 995.0 270 > th dose independent rect. 21 12
389 205.79 temperature 10.0 720 > th dose independent rect. 22 19
391 205.80 humidity 50.0 720 > th dose independent rect. 18 3
392 205.80 radiation 20.0 720 < th dose independent rect. 18 3
398 205.80 temperature 10.0 720 > th dose independent rect. 21 21
400 205.81 temperature 15.0 720 > th dose independent rect. 6 3
402 205.81 atmosphere 1015.0 720 < th dose independent rect. 13 5
404 205.81 radiation 40.0 270 < th dose dependent rect. 17 12
407 205.82 humidity 50.0 720 > th dose independent rect. 6 3
408 205.82 atmosphere 995.0 720 > th dose independent rect. 6 3
409 205.82 atmosphere 1015.0 720 < th dose independent rect. 6 3
410 205.82 wind 9.0 270 < th dose independent rect. 9 12
420 205.84 precipitation 0.1 720 < th dose independent rect. 2 11
425 205.84 precipitation 0.1 720 < th dose dependent rect. 2 11
426 205.85 wind 9.0 720 < th dose independent rect. 9 21
427 205.85 temperature 20.0 90 > th dose independent rect. 22 21
429 205.86 radiation 1.0 720 < th dose independent rect. 18 3
433 205.86 radiation 1.0 720 < th dose dependent rect. 21 5
435 205.87 temperature 10.0 720 > th dose independent rect. 21 5
436 205.87 temperature 30.0 720 < th dose independent rect. 21 5
437 205.87 humidity 50.0 720 > th dose independent rect. 21 5
440 205.87 atmosphere 995.0 720 > th dose independent rect. 21 5
442 205.87 radiation 1.0 720 < th dose independent rect. 21 5
448 205.87 temperature 10.0 720 > th dose independent rect. 2 19
454 205.88 temperature 10.0 720 > th dose independent rect. 9 5
455 205.88 atmosphere 995.0 720 > th dose independent rect. 9 5
456 205.88 atmosphere 995.0 720 > th dose independent rect. 17 5
457 205.88 atmosphere 1015.0 720 < th dose independent rect. 9 5
460 205.88 humidity 50.0 270 > th dose independent rect. 17 12
461 205.88 temperature 10.0 720 > th dose independent rect. 14 19
465 205.89 wind 5.0 10 > th dose independent rect. 12 2
468 205.90 precipitation 0.1 90 < th dose independent rect. 3 12
469 205.90 precipitation 0.1 90 < th dose dependent rect. 3 12
479 205.94 wind 9.0 720 < th dose independent rect. 18 19
483 205.96 precipitation 0.1 720 < th dose independent rect. 6 3
486 205.96 precipitation 0.1 720 < th dose dependent rect. 6 3
498 205.97 temperature 20.0 90 < th dose independent rect. 2 21
513 206.00 wind 1.0 90 < th dose dependent rect. 16 5
515 206.01 humidity 50.0 720 > th dose independent rect. 5 5
518 206.01 humidity 50.0 90 > th dose dependent rect. 19 12
525 206.03 precipitation 0.1 720 < th dose independent rect. 2 3
527 206.03 precipitation 0.1 720 < th dose dependent rect. 2 3
542 206.06 wind 5.0 10 > th dose independent rect. 7 2
545 206.06 wind 9.0 720 < th dose independent rect. 14 19
546 206.06 radiation 40.0 720 < th dose dependent rect. 1 5
551 206.07 wind 5.0 10 > th dose dependent rect. 7 1
571 206.10 humidity 90.0 720 < th dose independent rect. 10 3
573 206.10 wind 9.0 720 < th dose independent rect. 22 19
574 206.10 temperature 20.0 10 < th dose dependent rect. 2 1
577 206.11 precipitation 0.1 90 > th dose independent rect. 7 1
585 206.11 precipitation 0.1 90 > th dose dependent rect. 7 1
593 206.12 wind 1.0 90 < th dose independent rect. 20 1
596 206.12 radiation 40.0 720 < th dose independent rect. 5 5
610 206.14 radiation 1.0 720 > th dose independent rect. 9 5
612 206.15 wind 1.0 10 < th dose dependent rect. 6 1
617 206.17 wind 5.0 90 > th dose independent rect. 13 1
619 206.17 atmosphere 1015.0 10 < th dose independent rect. 23 21
620 206.18 precipitation 0.1 720 < th dose independent rect. 5 5
625 206.18 precipitation 0.1 720 < th dose dependent rect. 5 5
631 206.21 wind 9.0 720 < th dose independent rect. 1 13
637 206.23 precipitation 0.1 270 < th dose independent rect. 9 12
639 206.23 precipitation 0.1 270 < th dose dependent rect. 9 12
663 206.25 wind 9.0 720 < th dose independent rect. 2 11
667 206.26 wind 7.0 90 < th dose independent rect. 15 12
679 206.31 radiation 1.0 90 > th dose independent rect. 4 1
689 206.31 wind 9.0 720 < th dose independent rect. 17 21
691 206.31 radiation 1.0 90 > th dose dependent rect. 4 1
706 206.33 wind 9.0 720 < th dose independent rect. 13 5
719 206.35 temperature 10.0 270 > th dose independent rect. 1 12
720 206.35 temperature 10.0 270 > th dose independent rect. 13 12
721 206.35 atmosphere 995.0 270 > th dose independent rect. 1 12
722 206.35 atmosphere 1015.0 270 < th dose independent rect. 1 12
727 206.37 humidity 90.0 720 < th dose independent rect. 9 5
735 206.37 wind 9.0 720 < th dose independent rect. 6 19
738 206.39 wind 9.0 90 < th dose independent rect. 3 12
739 206.39 precipitation 0.1 270 < th dose independent rect. 5 12
748 206.39 precipitation 0.1 270 < th dose dependent rect. 5 12
750 206.40 wind 1.0 720 > th dose independent rect. 14 3
752 206.40 wind 9.0 720 < th dose independent rect. 1 21
756 206.42 wind 7.0 720 < th dose independent rect. 2 3
764 206.42 radiation 1.0 720 < th dose dependent rect. 2 3
766 206.43 temperature 15.0 720 > th dose independent rect. 22 3
767 206.43 radiation 30.0 90 < th dose independent rect. 15 12
773 206.44 wind 9.0 270 < th dose independent rect. 13 12
779 206.45 wind 9.0 720 < th dose independent rect. 21 21
787 206.47 radiation 1.0 720 < th dose independent rect. 2 3
791 206.47 radiation 40.0 720 < th dose independent rect. 15 18
798 206.48 radiation 20.0 10 < th dose independent rect. 12 15
805 206.49 temperature 10.0 720 > th dose independent rect. 2 3
806 206.49 temperature 30.0 720 < th dose independent rect. 2 3
807 206.49 humidity 50.0 720 > th dose independent rect. 2 3
810 206.49 atmosphere 995.0 720 > th dose independent rect. 2 3
818 206.49 temperature 10.0 720 > th dose independent rect. 5 21
819 206.49 wind 5.0 10 > th dose dependent rect. 12 2
820 206.50 wind 1.0 720 > th dose independent rect. 2 3
821 206.50 wind 9.0 720 < th dose independent rect. 14 3
846 206.54 temperature 10.0 720 > th dose independent rect. 14 3
847 206.54 atmosphere 1015.0 720 < th dose independent rect. 14 3
852 206.54 atmosphere 1005.0 90 < th dose independent rect. 18 8
854 206.54 precipitation 0.1 270 < th dose independent rect. 21 12
857 206.54 temperature 10.0 720 > th dose independent rect. 17 21
859 206.54 precipitation 0.1 270 < th dose dependent rect. 21 12
861 206.55 temperature 30.0 720 < th dose independent rect. 22 3
863 206.55 humidity 50.0 720 > th dose independent rect. 22 3
866 206.55 atmosphere 995.0 720 > th dose independent rect. 22 3
867 206.55 radiation 1.0 720 < th dose independent rect. 22 3
873 206.55 temperature 10.0 720 > th dose independent rect. 1 21
874 206.55 radiation 1.0 720 < th dose dependent rect. 22 3
880 206.56 wind 9.0 720 < th dose independent rect. 10 3
881 206.56 temperature 10.0 720 > th dose independent rect. 10 3
882 206.56 atmosphere 995.0 720 > th dose independent rect. 10 3
883 206.56 atmosphere 1015.0 720 < th dose independent rect. 10 3
888 206.56 temperature 10.0 720 > th dose independent rect. 13 21
890 206.57 precipitation 0.1 720 < th dose independent rect. 10 3
894 206.57 precipitation 0.1 720 < th dose dependent rect. 10 3
906 206.59 radiation 1.0 720 > th dose independent rect. 10 3
917 206.61 precipitation 0.1 270 < th dose independent rect. 17 12
924 206.61 precipitation 0.1 270 < th dose dependent rect. 17 12
938 206.63 temperature 10.0 90 > th dose independent rect. 3 12
939 206.63 temperature 10.0 90 > th dose independent rect. 15 12
940 206.63 atmosphere 1015.0 90 < th dose independent rect. 3 12