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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0284500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nectarin 1 precursor (EC 1.15.1.1) (Superoxide dismutase [Mn]).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.62 (0.0603) R2 : 0.564
β1 : 2.19 (0.234) R2dD : 0.102 R2D : -0.11
β2 : 0.661 (0.143) R2dC : 0.0224 R2C : -0.03
β3 : 3.51 (0.232) R2dE : 0.244 R2E : 0.269
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.6 (1.01) R2dD*E : 0.0498 R2D*E : -0.0373
γ1 : 1.76 (0.129) R2dN8 : 0.251 R2N8 : 0.24
σ : 1.11
deviance : 563.75
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_____
C
peak time of C : 13.4
E
wheather : radiation
threshold : 4.472
memory length : 1627
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.9
open length of G : 15

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
547.07 1.1 4.62 2.05 0.755 3.48 2.38 6.7 1.82 13.7 7.432 1618 16 15.1
595.81 1.14 4.62 1.52 0.474 3.93 2.24 -- 1.87 13.4 4.256 1629 15.8 15.2
563.75 1.11 4.62 2.19 0.661 3.51 -- 6.6 1.76 13.4 4.472 1627 15.9 15
606.75 1.15 4.63 1.53 0.534 4.04 -- -- 1.58 12.6 -0.1399 1629 15.8 15.1
591.23 1.13 4.66 2.17 -- 3.56 -- 6.11 1.72 -- 4.337 1629 15.9 15
916.7 1.42 4.49 1.03 0.606 -- 1.62 -- 2.1 14.2 -- -- -- --
926.04 1.43 4.49 1.08 0.624 -- -- -- 2.11 14.8 -- -- -- --
624.38 1.16 4.62 1.49 -- 4.08 -- -- 1.59 -- 6.795e-09 1631 15.8 15.1
658.2 1.19 4.63 -- 0.528 3.98 -- -- 1.48 12.5 -0.2253 1619 15.8 15.3
948.64 1.44 4.49 1.05 -- -- -- -- 2.1 -- -- -- -- --
956.52 1.45 4.52 -- 0.603 -- -- -- 1.99 14.8 -- -- -- --
672.93 1.21 4.63 -- -- 3.85 -- -- 1.52 -- 1.314e-07 1633 15.7 15.7
977.64 1.46 4.52 -- -- -- -- -- 1.98 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 574.67 radiation 10 1440 > th dose dependent rect. 16 15
2 578.12 radiation 20 1440 > th dose dependent rect. 15 17
3 581.12 temperature 30 1440 > th dose dependent rect. 13 6
37 582.31 temperature 30 1440 > th dose dependent sin 16 NA
122 585.51 temperature 30 1440 > th dose dependent no NA NA
229 585.93 temperature 30 1440 > th dose dependent rect. 15 23
264 588.36 radiation 30 1440 < th dose dependent rect. 16 15
295 591.39 radiation 10 1440 > th dose independent rect. 16 15
317 593.12 radiation 10 1440 < th dose independent rect. 16 15
321 593.65 radiation 10 1440 > th dose dependent rect. 16 2
336 594.72 humidity 80 1440 < th dose dependent rect. 16 5
345 596.10 radiation 20 1440 > th dose independent rect. 15 17
377 599.79 temperature 30 1440 < th dose independent rect. 18 20
388 601.91 temperature 30 1440 > th dose independent rect. 17 21
408 602.70 temperature 30 1440 < th dose independent rect. 16 18
416 603.04 temperature 30 1440 < th dose independent sin 11 NA
419 603.24 temperature 30 1440 < th dose independent rect. 9 1
420 603.28 temperature 30 1440 > th dose independent rect. 16 3
457 604.06 temperature 30 1440 > th dose independent sin 11 NA
460 604.24 temperature 25 1440 > th dose dependent rect. 6 2
466 604.56 radiation 30 14400 > th dose independent rect. 16 16
482 605.37 temperature 25 1440 > th dose dependent rect. 4 4
483 605.39 temperature 30 1440 < th dose independent rect. 16 8
484 605.40 temperature 30 1440 < th dose independent rect. 16 16
487 605.45 temperature 30 1440 < th dose independent rect. 16 13
500 605.66 humidity 80 1440 < th dose dependent rect. 15 17
506 605.84 temperature 30 1440 < th dose independent rect. 16 3
511 605.97 temperature 30 1440 < th dose independent rect. 9 5
512 606.00 humidity 70 1440 < th dose dependent rect. 16 1
513 606.02 humidity 70 1440 < th dose independent sin 13 NA
521 606.43 humidity 70 1440 > th dose independent sin 13 NA
524 606.50 radiation 30 14400 > th dose independent rect. 7 1
548 606.82 temperature 30 1440 > th dose independent rect. 9 10
565 607.16 temperature 30 1440 < th dose independent rect. 9 15
569 607.20 temperature 30 1440 < th dose independent rect. 9 19
571 607.20 temperature 30 1440 < th dose independent rect. 9 22
577 607.22 radiation 30 1440 < th dose independent rect. 20 12
580 607.27 temperature 30 1440 < th dose independent rect. 9 10
598 608.11 temperature 30 1440 > th dose independent rect. 9 5
607 608.43 humidity 70 1440 > th dose independent rect. 16 9
611 608.52 humidity 70 1440 > th dose independent rect. 16 12
616 608.57 radiation 30 1440 > th dose independent rect. 15 1
618 608.60 temperature 30 1440 > th dose independent rect. 9 2
628 608.86 temperature 30 1440 < th dose independent rect. 12 23
631 608.94 temperature 30 1440 < th dose independent rect. 3 21
633 608.94 temperature 30 1440 < th dose independent rect. 20 23
634 608.95 temperature 30 1440 < th dose independent rect. 6 18
652 608.99 temperature 30 1440 < th dose independent rect. 6 22
655 609.00 temperature 30 1440 < th dose independent no NA NA
692 609.04 temperature 30 1440 < th dose independent rect. 23 23
695 609.05 temperature 30 1440 < th dose independent rect. 2 17
698 609.06 temperature 30 1440 < th dose independent rect. 6 13
701 609.06 temperature 30 1440 > th dose independent rect. 12 23
752 609.33 temperature 30 1440 > th dose independent no NA NA
847 609.42 temperature 30 14400 > th dose dependent rect. 17 1
859 609.91 temperature 30 1440 < th dose independent rect. 20 18
862 609.95 radiation 30 1440 < th dose independent rect. 15 1
868 610.14 temperature 30 1440 < th dose independent rect. 7 7
870 610.14 temperature 30 1440 < th dose independent rect. 3 11
886 610.35 humidity 70 1440 < th dose independent rect. 15 5
949 610.63 radiation 30 1440 > th dose independent rect. 7 1