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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0283700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.33 (0.0523) R2 : 0.703
β1 : -3.79 (0.3) R2dD : 0.41 R2D : -0.122
β2 : 2.55 (0.104) R2dC : 0.392 R2C : 0.373
β3 : 2.47 (0.146) R2dE : 0.26 R2E : 0.128
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.57 (0.818) R2dD*E : 0.157 R2D*E : -0.186
γ1 : -0.0405 (0.119) R2dN8 : 0.000193 R2N8 : -0.00886
σ : 0.784
deviance : 283.62
__
_____
C
peak time of C : 8.93
E
wheather : temperature
threshold : 20.78
memory length : 1447
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
280.16 0.786 5.33 -3.76 2.55 2.48 -1.01 -6.63 -0.0437 8.94 20.75 1428 -- --
299.1 0.805 5.2 -2.57 2.54 3.03 -0.856 -- 0.118 8.81 13.78 8532 -- --
283.62 0.784 5.33 -3.79 2.55 2.47 -- -6.57 -0.0405 8.93 20.78 1447 -- --
300.14 0.807 5.19 -2.69 2.53 3.15 -- -- 0.078 8.91 9.107 8621 -- --
655.62 1.19 5.39 -3.69 -- 2.4 -- -6.35 -0.00131 -- 20.67 1465 -- --
459.46 1 4.97 -0.969 2.52 -- -0.973 -- 1.02 8.72 -- -- -- --
462.58 1.01 4.97 -1 2.52 -- -- -- 1.02 8.74 -- -- -- --
665.31 1.2 5.25 -2.67 -- 3.12 -- -- 0.107 -- 8.028 8692 -- --
404.65 0.937 5.01 -- 2.7 2.04 -- -- 0.815 8.8 13.2 1998 -- --
823.53 1.34 5.04 -0.996 -- -- -- -- 1.04 -- -- -- -- --
488.97 1.03 4.95 -- 2.52 -- -- -- 1.13 8.77 -- -- -- --
773.1 1.3 5.07 -- -- 2.24 -- -- 0.894 -- 13.2 1998 -- --
849.73 1.36 5.02 -- -- -- -- -- 1.15 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 270.10 radiation 1 43200 > th dose independent rect. 18 1
12 273.17 temperature 20 720 > th dose dependent rect. 18 15
13 273.35 radiation 1 4320 < th dose dependent rect. 2 3
14 273.41 humidity 80 43200 < th dose dependent rect. 22 11
17 274.19 radiation 1 43200 < th dose independent rect. 18 10
18 274.24 radiation 1 43200 < th dose independent rect. 18 2
21 274.27 radiation 1 43200 < th dose independent rect. 18 7
24 274.29 radiation 1 43200 < th dose independent rect. 18 4
29 274.79 temperature 20 1440 > th dose dependent rect. 16 7
31 275.10 temperature 20 1440 > th dose dependent rect. 14 17
37 275.32 temperature 20 1440 > th dose dependent rect. 15 10
41 275.39 temperature 20 1440 > th dose dependent rect. 15 14
49 275.58 temperature 20 1440 > th dose dependent rect. 18 3
57 275.85 temperature 20 1440 > th dose dependent sin 15 NA
58 275.86 humidity 90 43200 > th dose independent rect. 22 1
67 276.32 temperature 25 4320 > th dose independent rect. 5 13
84 276.63 temperature 25 4320 < th dose independent rect. 5 13
90 276.77 temperature 25 4320 < th dose independent rect. 17 1
105 277.17 temperature 20 720 > th dose dependent sin 10 NA
126 277.85 radiation 1 43200 < th dose dependent rect. 2 3
132 278.01 wind 9 43200 > th dose dependent rect. 19 2
143 278.28 humidity 90 43200 < th dose independent rect. 19 2
146 278.31 wind 5 43200 < th dose independent rect. 9 13
149 278.40 wind 5 43200 > th dose independent rect. 9 12
166 278.73 temperature 25 4320 > th dose independent rect. 16 2
168 278.74 temperature 25 4320 > th dose independent sin 2 NA
171 278.76 temperature 25 4320 > th dose independent rect. 5 9
185 279.00 wind 9 43200 > th dose independent rect. 19 2
187 279.04 temperature 25 4320 < th dose independent rect. 5 9
188 279.06 temperature 25 4320 < th dose independent sin 1 NA
211 279.36 humidity 90 43200 < th dose independent rect. 19 4
212 279.37 wind 5 43200 < th dose independent rect. 5 16
225 279.53 humidity 90 43200 < th dose independent rect. 22 1
241 279.70 wind 5 43200 > th dose independent sin 21 NA
249 279.78 wind 5 43200 < th dose independent sin 21 NA
252 279.84 humidity 90 43200 > th dose independent rect. 20 3
268 279.92 wind 5 43200 > th dose independent rect. 5 16
272 279.95 wind 9 43200 < th dose independent rect. 19 2
273 279.95 wind 5 43200 < th dose independent rect. 9 8
311 280.35 wind 5 43200 > th dose independent rect. 9 8
317 280.40 radiation 1 43200 < th dose dependent rect. 18 11
343 280.68 temperature 25 4320 < th dose independent rect. 15 4
355 280.79 humidity 80 43200 < th dose independent rect. 2 6
382 281.04 humidity 90 43200 > th dose independent rect. 20 1
428 281.39 temperature 20 1440 > th dose dependent no NA NA
436 281.45 temperature 20 1440 > th dose dependent rect. 2 23
443 281.54 wind 3 43200 > th dose dependent rect. 9 13
456 281.68 radiation 1 43200 < th dose dependent rect. 18 1
458 281.68 wind 3 43200 > th dose dependent rect. 9 7
464 281.73 radiation 1 43200 < th dose dependent rect. 18 4
515 282.01 temperature 20 1440 > th dose dependent rect. 20 23
551 282.24 wind 3 43200 > th dose dependent rect. 5 16
589 282.51 humidity 80 43200 > th dose dependent rect. 18 1
600 282.57 wind 3 43200 > th dose dependent sin 22 NA
612 282.63 wind 1 43200 > th dose dependent rect. 20 1
638 282.73 temperature 10 4320 > th dose dependent rect. 17 1
662 282.94 wind 9 43200 < th dose dependent rect. 20 1
711 283.26 wind 3 43200 < th dose independent rect. 9 1
726 283.34 temperature 30 4320 < th dose dependent rect. 17 1
731 283.36 temperature 25 4320 > th dose independent rect. 10 10
740 283.43 temperature 20 4320 > th dose dependent rect. 3 16
755 283.52 humidity 80 43200 < th dose independent rect. 21 11
769 283.63 temperature 25 4320 < th dose independent rect. 10 10
843 283.94 wind 3 43200 > th dose independent rect. 9 1
868 284.06 radiation 20 43200 < th dose independent rect. 8 1
980 284.54 wind 5 43200 < th dose independent rect. 15 7