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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0280600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.0411) R2 : 0.177
β1 : -0.171 (0.152) R2dD : 0.00243 R2D : -0.00593
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.95 (0.451) R2dE : 0.0782 R2E : 0.0881
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.3 (1.12) R2dD*E : 0.0782 R2D*E : 0.0805
γ1 : -0.205 (0.088) R2dN8 : 0.0138 R2N8 : 0.0118
σ : 0.769
deviance : 272.5
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1008
memory length : 38
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 9.14
open length of G : 0.477

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
272.87 0.776 2.98 -0.172 0.12 2.92 0.188 7.29 -0.209 2.13 1008 49 9.08 0.979
296.69 0.802 2.99 -0.0989 0.124 3.21 -0.21 -- -0.187 0.797 1008 34 9.22 0.383
271.69 0.768 2.99 -0.156 0.116 3 -- 7.47 -0.206 0.995 1008 38 9.15 0.483
296.95 0.803 2.98 -0.0673 0.133 3.32 -- -- -0.182 0.791 1008 34 9.23 0.383
272.5 0.769 2.98 -0.171 -- 2.95 -- 7.3 -0.205 -- 1008 38 9.14 0.477
323.46 0.843 2.98 -0.0878 0.0833 -- 1.06 -- -0.227 7.49 -- -- -- --
326.41 0.846 2.98 -0.0651 0.103 -- -- -- -0.23 5.42 -- -- -- --
297.29 0.803 2.98 -0.0609 -- 3.3 -- -- -0.188 -- 1008 34 9.21 0.25
296.59 0.802 2.97 -- 0.114 3.37 -- -- -0.182 0.443 1008 34 9.22 0.237
326.96 0.845 2.98 -0.0616 -- -- -- -- -0.228 -- -- -- -- --
326.52 0.845 2.98 -- 0.102 -- -- -- -0.223 5.44 -- -- -- --
297.36 0.803 2.97 -- -- 3.3 -- -- -0.182 -- 1008 34 9.21 0.25
327.06 0.844 2.98 -- -- -- -- -- -0.221 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 276.03 atmosphere 1010 90 > th dose independent rect. 8 1
2 276.03 atmosphere 1010 10 > th dose independent rect. 9 1
62 281.55 atmosphere 1005 90 > th dose dependent rect. 9 1
139 291.85 temperature 25 90 < th dose independent rect. 8 1
192 297.97 atmosphere 1015 1440 > th dose dependent rect. 24 12
213 298.92 atmosphere 1015 1440 > th dose independent rect. 24 12
219 299.09 atmosphere 1010 90 < th dose independent rect. 3 10
232 299.61 atmosphere 1015 1440 < th dose independent rect. 24 12
238 299.75 atmosphere 1015 1440 > th dose dependent sin 3 NA
240 299.83 atmosphere 1015 1440 > th dose dependent rect. 24 16
266 300.11 atmosphere 1015 1440 > th dose dependent rect. 10 3
280 300.24 atmosphere 1015 1440 > th dose dependent rect. 10 10
323 300.35 atmosphere 1015 1440 > th dose independent rect. 10 1
339 300.35 atmosphere 1015 1440 > th dose dependent rect. 10 1
362 300.40 atmosphere 1015 1440 < th dose independent rect. 11 1
394 300.82 atmosphere 1015 1440 < th dose independent rect. 4 8
400 300.86 atmosphere 1015 1440 < th dose independent rect. 9 3
409 300.94 atmosphere 1015 1440 < th dose independent rect. 7 5
424 301.23 atmosphere 1010 270 > th dose independent rect. 5 1
463 302.01 humidity 90 90 > th dose independent rect. 9 1
465 302.01 humidity 90 90 > th dose dependent rect. 9 1
479 302.56 atmosphere 995 90 > th dose dependent rect. 10 7
492 302.81 atmosphere 995 10 > th dose dependent rect. 11 5
502 303.03 atmosphere 1015 1440 > th dose independent sin 3 NA
509 303.15 atmosphere 995 90 > th dose dependent rect. 10 9
510 303.17 radiation 10 10 > th dose independent rect. 9 2
514 303.24 atmosphere 1010 30 > th dose independent sin 4 NA
518 303.32 atmosphere 1015 1440 > th dose independent rect. 24 19
566 303.48 atmosphere 995 270 > th dose dependent rect. 11 1
587 303.77 temperature 10 10 > th dose dependent rect. 3 8
591 303.81 atmosphere 1015 1440 > th dose independent rect. 10 10
608 303.85 atmosphere 995 10 > th dose dependent rect. 11 3
611 303.90 atmosphere 1010 90 < th dose independent sin 4 NA
650 304.16 atmosphere 1015 1440 < th dose independent sin 3 NA
652 304.19 radiation 10 90 > th dose independent rect. 7 3
677 304.39 humidity 60 4320 < th dose independent rect. 18 2
693 304.42 temperature 25 270 < th dose dependent rect. 6 1
695 304.45 temperature 30 10 < th dose independent rect. 11 16
736 304.65 wind 7 90 < th dose dependent rect. 9 1
737 304.65 humidity 60 4320 < th dose dependent rect. 18 1
741 304.71 humidity 50 30 > th dose independent rect. 12 23
743 304.73 wind 3 10 > th dose independent rect. 10 1
764 304.85 atmosphere 1015 1440 < th dose independent rect. 24 18
768 304.89 humidity 60 4320 > th dose independent rect. 18 6
777 304.94 temperature 30 270 < th dose independent rect. 11 1
828 305.09 radiation 30 10 > th dose independent rect. 10 1
830 305.09 humidity 60 10 > th dose independent rect. 8 3
833 305.10 humidity 60 4320 > th dose independent rect. 18 14
837 305.11 radiation 10 270 < th dose dependent rect. 6 1
840 305.13 atmosphere 995 90 > th dose independent rect. 13 21
843 305.14 atmosphere 995 30 > th dose independent rect. 12 23
967 305.26 temperature 20 10 > th dose independent rect. 5 6
975 305.30 radiation 1 10 > th dose independent rect. 11 1
976 305.31 wind 5 90 < th dose independent rect. 9 1
982 305.32 wind 7 10 < th dose independent rect. 3 8
984 305.35 radiation 10 270 < th dose independent rect. 6 2
986 305.36 atmosphere 1015 1440 < th dose independent rect. 9 9
988 305.36 atmosphere 1015 1440 < th dose independent rect. 6 12