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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0280500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Eukaryotic translation initiation factor 6 (eIF-6) (B4 integrin interactor) (CAB) (p27(BBP)) (B(2)GCN homolog).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0183) R2 : 0.00133
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0299 (0.0384) R2dN8 : 0.00172 R2N8 : 0.00133
σ : 0.344
deviance : 54.23
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.11 0.336 3.08 -0.0264 0.00488 -0.275 -0.284 1.37 0.0202 1.43 1.096 16 -- --
52.56 0.34 3.07 0.0307 0.0192 -0.157 -0.428 -- 0.0353 2.34 1.096 16 -- --
51.42 0.334 3.08 -0.0208 0.0126 -0.27 -- 1.49 0.0197 2.51 1.006 16 -- --
53.16 0.342 3.07 0.0441 0.0452 -0.139 -- -- 0.0371 5.98 1.063 16 -- --
51.42 0.334 3.08 -0.0206 -- -0.279 -- 1.49 0.0206 -- 1.003 16 -- --
53.32 0.342 3.07 0.0512 0.0722 -- -0.405 -- 0.0326 3.21 -- -- -- --
53.76 0.343 3.07 0.0593 0.0846 -- -- -- 0.0347 5.11 -- -- -- --
53.25 0.341 3.07 0.0434 -- -0.156 -- -- 0.0383 -- 1.063 16 -- --
53.21 0.342 3.07 -- 0.0447 -0.143 -- -- 0.0323 5.97 1.063 16 -- --
54.13 0.344 3.07 0.0623 -- -- -- -- 0.0368 -- -- -- -- --
53.85 0.343 3.07 -- 0.0856 -- -- -- 0.0281 5.09 -- -- -- --
53.3 0.341 3.07 -- -- -0.16 -- -- 0.0335 -- 1.063 16 -- --
54.23 0.344 3.07 -- -- -- -- -- 0.0299 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.54 temperature 20.0 30 > th dose dependent rect. 2 1
2 42.60 atmosphere 1005.0 30 > th dose dependent rect. 2 1
3 42.63 atmosphere 1005.0 30 > th dose independent rect. 2 1
5 42.65 temperature 20.0 30 > th dose independent rect. 2 1
8 42.70 wind 3.0 30 < th dose dependent rect. 2 1
12 42.73 wind 3.0 30 < th dose independent rect. 2 1
17 42.81 humidity 80.0 30 > th dose independent rect. 2 1
19 42.82 temperature 10.0 30 > th dose independent rect. 2 1
21 42.82 temperature 30.0 30 < th dose independent rect. 2 1
22 42.82 humidity 50.0 30 > th dose independent rect. 2 1
26 42.82 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 42.82 radiation 1.0 30 < th dose independent rect. 2 1
33 42.82 precipitation 0.1 30 < th dose independent rect. 2 1
34 42.82 temperature 10.0 30 > th dose independent rect. 3 23
35 42.82 humidity 50.0 30 > th dose dependent rect. 2 1
37 42.82 radiation 1.0 30 < th dose dependent rect. 2 1
42 42.82 precipitation 0.1 30 < th dose dependent rect. 2 1
49 43.17 atmosphere 1015.0 30 < th dose dependent rect. 2 1
51 43.31 temperature 30.0 30 < th dose dependent rect. 2 1
53 43.52 wind 1.0 30 > th dose independent rect. 2 1
58 43.59 radiation 10.0 43200 < th dose dependent rect. 3 1
59 43.60 radiation 1.0 4320 < th dose dependent rect. 3 1
68 43.63 wind 9.0 1440 < th dose independent rect. 3 1
69 43.63 temperature 10.0 1440 > th dose independent rect. 3 1
72 43.63 temperature 30.0 1440 < th dose independent rect. 3 1
76 43.63 humidity 50.0 1440 > th dose independent rect. 3 1
85 43.63 atmosphere 995.0 1440 > th dose independent rect. 3 1
86 43.63 radiation 1.0 1440 < th dose independent rect. 3 1
106 43.63 temperature 10.0 1440 > th dose independent rect. 4 23
160 44.26 wind 9.0 30 < th dose independent rect. 3 23
165 44.75 atmosphere 995.0 30 > th dose independent rect. 3 23
170 44.96 precipitation 0.1 30 < th dose independent rect. 3 23
172 44.96 precipitation 0.1 30 < th dose dependent rect. 3 23
189 46.73 humidity 50.0 720 > th dose independent rect. 23 16
203 47.63 humidity 50.0 30 > th dose independent rect. 3 23
209 47.93 temperature 25.0 270 > th dose independent rect. 22 5
241 48.39 temperature 25.0 270 > th dose dependent rect. 22 5
252 48.61 wind 9.0 720 < th dose independent rect. 3 8
256 48.65 temperature 30.0 30 < th dose independent rect. 3 23
257 48.65 temperature 25.0 270 > th dose dependent rect. 23 1
260 48.72 precipitation 0.1 720 < th dose independent rect. 3 8
262 48.72 precipitation 0.1 720 < th dose dependent rect. 3 8
266 48.77 humidity 50.0 720 > th dose independent rect. 3 8
267 48.77 atmosphere 995.0 720 > th dose independent rect. 23 16
268 48.78 temperature 10.0 720 > th dose independent rect. 3 8
269 48.78 atmosphere 995.0 720 > th dose independent rect. 3 8
270 48.78 temperature 10.0 720 > th dose independent rect. 11 16
271 48.79 temperature 25.0 270 > th dose independent rect. 23 1
274 48.81 precipitation 0.1 720 < th dose independent rect. 15 8
276 48.81 precipitation 0.1 720 < th dose dependent rect. 15 8
278 48.83 precipitation 0.1 720 < th dose independent rect. 23 16
280 48.83 precipitation 0.1 720 < th dose dependent rect. 23 16
281 48.84 temperature 10.0 720 > th dose independent rect. 15 8
282 48.84 temperature 10.0 720 > th dose independent rect. 23 16
285 48.86 humidity 90.0 90 < th dose independent rect. 2 1
286 48.88 atmosphere 1015.0 720 < th dose independent rect. 3 8
294 49.00 atmosphere 995.0 720 > th dose independent rect. 11 16
296 49.04 atmosphere 995.0 720 > th dose independent rect. 15 8
321 49.30 precipitation 0.1 720 < th dose independent rect. 11 16
323 49.30 precipitation 0.1 720 < th dose dependent rect. 11 16
324 49.31 temperature 20.0 30 > th dose dependent rect. 22 5
334 49.44 radiation 10.0 30 < th dose dependent rect. 3 23
362 49.73 humidity 50.0 720 > th dose independent rect. 7 8
374 49.82 temperature 25.0 10 > th dose dependent rect. 23 1
387 49.90 wind 9.0 30 < th dose dependent rect. 3 23
390 49.93 atmosphere 1015.0 30 < th dose independent rect. 3 23
394 49.95 wind 1.0 10 < th dose independent rect. 13 14
399 49.98 wind 1.0 10 < th dose independent rect. 17 10
408 50.00 temperature 25.0 10 > th dose independent rect. 23 1
409 50.01 radiation 10.0 30 < th dose independent rect. 3 23
418 50.05 temperature 10.0 30 > th dose dependent rect. 3 23
419 50.07 radiation 40.0 720 < th dose independent rect. 15 8
420 50.07 wind 1.0 10 > th dose independent rect. 23 23
424 50.08 wind 9.0 720 < th dose independent rect. 15 8
436 50.12 wind 3.0 30 < th dose dependent rect. 22 5
442 50.19 wind 1.0 720 > th dose independent rect. 15 8
477 50.33 wind 1.0 10 < th dose independent rect. 7 20
516 50.48 temperature 25.0 270 > th dose independent sin 11 NA
524 50.50 humidity 50.0 4320 > th dose independent rect. 14 1
556 50.55 wind 9.0 720 < th dose independent rect. 23 16
584 50.62 temperature 10.0 30 > th dose dependent rect. 3 19
586 50.63 wind 3.0 30 < th dose dependent rect. 16 11
622 50.67 wind 1.0 30 > th dose independent rect. 3 23
630 50.69 temperature 25.0 270 < th dose independent sin 11 NA
635 50.71 temperature 25.0 270 < th dose independent rect. 19 12
693 50.85 humidity 90.0 10 > th dose independent rect. 24 3
695 50.85 temperature 30.0 720 < th dose independent rect. 17 8
793 50.98 wind 1.0 10 > th dose independent sin 15 NA
799 50.98 radiation 40.0 90 < th dose independent rect. 11 16
819 51.00 temperature 30.0 720 < th dose independent rect. 3 8
839 51.03 wind 5.0 90 < th dose independent rect. 21 6
859 51.06 wind 9.0 720 < th dose independent rect. 11 16
864 51.07 humidity 50.0 720 < th dose independent rect. 13 1
872 51.08 temperature 15.0 90 > th dose independent rect. 3 18
899 51.12 wind 1.0 10 < th dose independent rect. 2 10
906 51.13 precipitation 0.1 720 < th dose independent rect. 3 16
907 51.13 wind 7.0 90 < th dose independent rect. 3 18
912 51.13 precipitation 0.1 720 < th dose dependent rect. 3 16
948 51.14 atmosphere 995.0 90 > th dose independent rect. 3 18
956 51.15 wind 1.0 10 > th dose independent sin 7 NA
960 51.15 atmosphere 1015.0 90 < th dose independent rect. 21 6
993 51.19 humidity 50.0 4320 < th dose independent rect. 14 1
996 51.19 wind 1.0 10 > th dose independent rect. 17 14