Os01g0280400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os01g0280400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 140.56 | 0.557 | 8.86 | 1.9 | 2.71 | 4.02 | 1.88 | -0.277 | -0.194 | 20.3 | 1.663 | 264 | 18.3 | -- |
| 140.79 | 0.553 | 8.86 | 1.91 | 2.68 | 4.03 | 2 | -- | -0.199 | 20.3 | 1.74 | 264 | 18.2 | -- |
| 150 | 0.57 | 8.87 | 1.88 | 2.73 | 4 | -- | -0.842 | -0.211 | 20.2 | 1.69 | 258 | 18.2 | -- |
| 153.21 | 0.576 | 8.86 | 1.85 | 2.69 | 4 | -- | -- | -0.203 | 20.2 | 1.662 | 261 | 18.2 | -- |
| 215.88 | 0.684 | 8.78 | 2.01 | -- | 4.9 | -- | 0.477 | -0.145 | -- | -16.26 | 506 | 18 | -- |
| 215.88 | 0.689 | 8.83 | 2.02 | 4.9 | -- | 0.509 | -- | -0.144 | 16.2 | -- | -- | -- | -- |
| 216.6 | 0.689 | 8.83 | 2.03 | 4.9 | -- | -- | -- | -0.141 | 16.2 | -- | -- | -- | -- |
| 216.6 | 0.685 | 8.77 | 2.03 | -- | 4.9 | -- | -- | -0.141 | -- | -16.91 | 512 | 18.1 | -- |
| 242.74 | 0.726 | 8.9 | -- | 2.66 | 4.04 | -- | -- | -0.388 | 20.4 | 1.36 | 260 | 18.1 | -- |
| 1519.41 | 1.82 | 8.8 | 1.83 | -- | -- | -- | -- | -0.272 | -- | -- | -- | -- | -- |
| 324.86 | 0.843 | 8.88 | -- | 4.87 | -- | -- | -- | -0.367 | 16.2 | -- | -- | -- | -- |
| 278.79 | 0.778 | 8.88 | -- | -- | 5.05 | -- | -- | -0.47 | -- | 0.5741 | 581 | 19 | -- |
| 1607.68 | 1.87 | 8.85 | -- | -- | -- | -- | -- | -0.475 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.57 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 16 | 141.22 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 17 |
| 25 | 143.07 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 27 | 143.43 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 15 |
| 33 | 143.83 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 15 |
| 45 | 145.33 | radiation | 1.0 | 270 | > th | dose independent | sin | 0 | NA |
| 55 | 146.36 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 57 | 146.61 | humidity | 70.0 | 270 | > th | dose independent | rect. | 2 | 18 |
| 63 | 147.18 | temperature | 30.0 | 270 | < th | dose independent | rect. | 13 | 8 |
| 69 | 147.90 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 18 |
| 72 | 148.19 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 17 |
| 81 | 148.66 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 18 |
| 84 | 148.68 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 86 | 148.75 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 98 | 149.55 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 104 | 149.85 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 7 |
| 108 | 150.04 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 20 |
| 121 | 150.51 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 12 | 9 |
| 130 | 150.82 | radiation | 40.0 | 270 | < th | dose independent | rect. | 12 | 10 |
| 232 | 153.72 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 10 |
| 233 | 153.72 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 236 | 153.81 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 17 |
| 298 | 155.34 | wind | 7.0 | 270 | < th | dose independent | rect. | 9 | 17 |
| 329 | 155.81 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 21 |
| 339 | 156.09 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 340 | 156.09 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 341 | 156.09 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 349 | 156.30 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 9 |
| 351 | 156.36 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 380 | 156.89 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 16 | 15 |
| 383 | 156.92 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 395 | 157.09 | radiation | 1.0 | 270 | < th | dose independent | sin | 0 | NA |
| 405 | 157.22 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 15 | 17 |
| 409 | 157.29 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 19 |
| 443 | 157.73 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 6 | 17 |
| 463 | 158.03 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 19 |
| 471 | 158.16 | humidity | 70.0 | 90 | > th | dose independent | rect. | 13 | 9 |
| 486 | 158.31 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 14 |
| 502 | 158.56 | humidity | 70.0 | 10 | > th | dose independent | rect. | 17 | 16 |
| 505 | 158.58 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 19 |
| 506 | 158.64 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 7 |
| 520 | 158.78 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 531 | 158.97 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 8 |
| 565 | 159.20 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 15 | 5 |
| 627 | 159.66 | temperature | 15.0 | 270 | > th | dose independent | rect. | 13 | 9 |
| 630 | 159.67 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 21 |
| 666 | 159.95 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 9 |
| 679 | 160.11 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 9 |
| 696 | 160.27 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 13 | 8 |
| 705 | 160.34 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 719 | 160.49 | wind | 9.0 | 270 | < th | dose independent | rect. | 22 | 15 |
| 728 | 160.57 | temperature | 15.0 | 270 | > th | dose independent | rect. | 14 | 7 |
| 735 | 160.66 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 15 |
| 736 | 160.66 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 15 |
| 745 | 160.76 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 17 |
| 782 | 161.02 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 9 |
| 791 | 161.10 | radiation | 10.0 | 270 | < th | dose dependent | sin | 0 | NA |
| 809 | 161.29 | humidity | 70.0 | 90 | > th | dose independent | rect. | 17 | 5 |
| 827 | 161.40 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 17 |
| 828 | 161.40 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 17 |
| 850 | 161.63 | radiation | 1.0 | 270 | < th | dose independent | rect. | 16 | 3 |
| 884 | 161.82 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 885 | 161.82 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 931 | 162.17 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 945 | 162.26 | radiation | 1.0 | 30 | < th | dose independent | rect. | 6 | 17 |
| 969 | 162.45 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 7 |
| 988 | 162.55 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 17 |
| 989 | 162.55 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 17 |
| 998 | 162.61 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 13 | 10 |