Os01g0280200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0280200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 292.51 | 0.804 | 2.93 | 2.34 | 0.267 | 16.2 | -0.483 | -106 | -0.0539 | 23 | 1 | 7 | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 318.65 | 0.837 | 3.3 | 0.289 | 0.283 | -- | -0.441 | -- | -0.0885 | 23.4 | -- | -- | -- | -- |
| 319.49 | 0.837 | 3.3 | 0.307 | 0.285 | -- | -- | -- | -0.0868 | 23.4 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 324.57 | 0.842 | 3.29 | 0.314 | -- | -- | -- | -- | -0.0839 | -- | -- | -- | -- | -- |
| 321.97 | 0.839 | 3.31 | -- | 0.288 | -- | -- | -- | -0.121 | 23.5 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 327.18 | 0.844 | 3.3 | -- | -- | -- | -- | -- | -0.119 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 290.02 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 1 | 20 |
| 2 | 290.10 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 8 | 13 |
| 3 | 290.26 | wind | 1 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 8 | 290.97 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 17 | 12 |
| 9 | 290.97 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 23 | 22 |
| 11 | 291.05 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 12 | 291.08 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 13 | 291.10 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 16 | 291.23 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 15 | 6 |
| 19 | 291.37 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 8 | 21 |
| 24 | 291.56 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 32 | 291.87 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 15 | 14 |
| 35 | 291.90 | atmosphere | 995 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 76 | 291.90 | atmosphere | 995 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 117 | 291.91 | atmosphere | 995 | 720 | < th | dose independent | rect. | 18 | 1 |
| 138 | 291.91 | atmosphere | 995 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 170 | 292.03 | atmosphere | 995 | 1440 | < th | dose independent | sin | 6 | NA |
| 173 | 292.04 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 1 | 2 |
| 174 | 292.06 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 1 | 2 |
| 176 | 292.09 | atmosphere | 995 | 1440 | < th | dose dependent | sin | 7 | NA |
| 177 | 292.12 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 2 |
| 178 | 292.13 | atmosphere | 995 | 1440 | > th | dose independent | sin | 3 | NA |
| 214 | 292.28 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 215 | 292.29 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 216 | 292.30 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 1 | 15 |
| 266 | 292.49 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 268 | 292.51 | atmosphere | 995 | 1440 | > th | dose independent | no | NA | NA |
| 305 | 292.58 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 310 | 292.61 | atmosphere | 995 | 1440 | < th | dose independent | no | NA | NA |
| 321 | 292.61 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 542 | 292.71 | atmosphere | 995 | 1440 | < th | dose dependent | no | NA | NA |
| 733 | 292.72 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 739 | 292.74 | atmosphere | 995 | 1440 | > th | dose independent | sin | 13 | NA |
| 749 | 292.76 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 793 | 292.80 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 15 | 18 |
| 804 | 292.87 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 12 | 17 |
| 814 | 292.90 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 24 | 4 |
| 815 | 292.91 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 1 | 5 |
| 836 | 293.04 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 935 | 293.46 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 10 | 7 |
| 936 | 293.46 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 21 | 18 |