Os01g0278900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0278900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.87 | 0.311 | 14 | -0.414 | 0.969 | -0.518 | 0.148 | -0.726 | -0.616 | 22.5 | 71 | 2970 | -- | -- |
| 44.65 | 0.311 | 14 | -0.474 | 0.971 | -0.57 | 0.109 | -- | -0.633 | 22.6 | 70.28 | 2974 | -- | -- |
| 43.96 | 0.309 | 14 | -0.423 | 0.969 | -0.522 | -- | -0.705 | -0.617 | 22.5 | 71 | 2970 | -- | -- |
| 44.66 | 0.311 | 14 | -0.499 | 0.984 | -0.59 | -- | -- | -0.65 | 22.7 | 70.55 | 3052 | -- | -- |
| 77.7 | 0.411 | 14 | -0.532 | -- | -1.2 | -- | -0.275 | -0.658 | -- | 73 | 2312 | -- | -- |
| 53.49 | 0.343 | 14 | -0.432 | 0.975 | -- | 0.196 | -- | -0.57 | 22.6 | -- | -- | -- | -- |
| 53.64 | 0.343 | 14 | -0.44 | 0.974 | -- | -- | -- | -0.57 | 22.6 | -- | -- | -- | -- |
| 76.82 | 0.408 | 14 | -0.534 | -- | -1.21 | -- | -- | -0.685 | -- | 74.06 | 2309 | -- | -- |
| 48.44 | 0.324 | 14 | -- | 0.916 | -0.668 | -- | -- | -0.678 | 22.6 | 73 | 7953 | -- | -- |
| 111.93 | 0.494 | 14 | -0.423 | -- | -- | -- | -- | -0.566 | -- | -- | -- | -- | -- |
| 58.75 | 0.359 | 14 | -- | 0.971 | -- | -- | -- | -0.521 | 22.5 | -- | -- | -- | -- |
| 84.27 | 0.428 | 14 | -- | -- | -1.17 | -- | -- | -0.624 | -- | 74.57 | 2310 | -- | -- |
| 116.64 | 0.504 | 14 | -- | -- | -- | -- | -- | -0.519 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.79 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 22 | 20 |
| 2 | 41.84 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 2 | 20 |
| 3 | 41.84 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 2 | 20 |
| 5 | 41.85 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 2 | 16 |
| 7 | 41.85 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 2 | NA |
| 8 | 41.85 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 2 | 16 |
| 11 | 41.86 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 2 | 20 |
| 15 | 41.89 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 15 |
| 33 | 41.94 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 34 | 41.94 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 35 | 41.94 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 23 |
| 36 | 41.95 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 1 | NA |
| 37 | 41.95 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 1 | NA |
| 40 | 41.95 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 21 |
| 42 | 41.95 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 1 | NA |
| 46 | 41.96 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 21 |
| 48 | 41.96 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 21 |
| 49 | 41.97 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 22 |
| 50 | 41.97 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 22 |
| 51 | 41.97 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 22 |
| 157 | 42.10 | precipitation | 0.1 | 14400 | > th | dose independent | no | NA | NA |
| 158 | 42.10 | precipitation | 0.1 | 14400 | < th | dose independent | no | NA | NA |
| 162 | 42.10 | precipitation | 0.1 | 14400 | < th | dose dependent | no | NA | NA |
| 173 | 42.11 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 177 | 42.11 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 23 |
| 182 | 42.11 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 23 |
| 218 | 42.16 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 219 | 42.16 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 224 | 42.16 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 23 |
| 248 | 42.19 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 249 | 42.19 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 258 | 42.20 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 20 |
| 267 | 42.21 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 276 | 42.22 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 20 |
| 283 | 42.22 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 302 | 42.24 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 329 | 42.25 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 358 | 42.28 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 371 | 42.29 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 23 |
| 705 | 42.71 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 17 | NA |
| 707 | 42.71 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 17 | NA |
| 711 | 42.71 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 17 | NA |
| 743 | 42.76 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 13 | NA |
| 747 | 42.77 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 760 | 42.82 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 6 |
| 764 | 42.82 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 6 |
| 779 | 42.86 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 6 |
| 796 | 42.89 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 798 | 42.89 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 816 | 42.92 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 833 | 42.95 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 880 | 43.00 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 894 | 43.03 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 900 | 43.04 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 937 | 43.09 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 17 |
| 986 | 43.17 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 17 | 1 |