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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0278100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0191) R2 : 0.000913
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.026 (0.0403) R2dN8 : 0.00118 R2N8 : 0.000913
σ : 0.361
deviance : 59.69
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
55.57 0.35 2.87 -0.0299 0.0905 -0.129 -0.373 0.53 0.0923 3.81 23.1 757 -- --
56.32 0.352 2.89 -0.218 0.0886 -0.0964 -0.453 -- 0.029 5.36 23.1 688 -- --
55.87 0.348 2.87 -0.00223 0.0781 -0.138 -- 0.572 0.107 3.71 23.32 577 -- --
56.45 0.35 2.9 -0.234 0.07 -0.129 -- -- 0.0471 5.62 22.84 115 -- --
56.11 0.349 2.86 0.00336 -- -0.142 -- 0.559 0.111 -- 23.39 423 -- --
56.99 0.354 2.9 -0.258 0.0979 -- -0.454 -- -0.00681 4.98 -- -- -- --
57.51 0.355 2.9 -0.257 0.0949 -- -- -- -0.00458 5 -- -- -- --
56.68 0.351 2.89 -0.202 -- -0.141 -- -- 0.0457 -- 22.65 121 -- --
57.39 0.353 2.88 -- 0.076 -0.168 -- -- 0.0758 6.99 22.8 102 -- --
57.99 0.356 2.9 -0.254 -- -- -- -- -0.00215 -- -- -- -- --
59.26 0.36 2.89 -- 0.0904 -- -- -- 0.0241 5.1 -- -- -- --
57.69 0.354 2.88 -- -- -0.168 -- -- 0.0784 -- 22.8 115 -- --
59.69 0.361 2.89 -- -- -- -- -- 0.026 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.27 temperature 20.0 10 < th dose dependent rect. 4 6
2 51.28 temperature 20.0 10 < th dose dependent rect. 6 1
8 51.35 temperature 20.0 10 < th dose dependent rect. 4 3
13 51.41 temperature 20.0 270 < th dose independent rect. 2 4
18 51.45 temperature 20.0 270 < th dose dependent rect. 2 4
20 51.48 radiation 1.0 10 < th dose dependent rect. 6 1
28 51.58 radiation 1.0 10 < th dose independent rect. 6 1
37 51.78 temperature 20.0 90 < th dose independent rect. 5 1
196 53.51 temperature 20.0 90 < th dose independent rect. 18 1
199 53.51 temperature 20.0 90 < th dose dependent rect. 18 1
200 53.51 temperature 20.0 10 < th dose dependent rect. 18 2
209 53.52 radiation 1.0 270 > th dose independent rect. 4 1
229 53.52 radiation 1.0 270 > th dose dependent rect. 4 1
243 53.53 temperature 20.0 270 < th dose independent rect. 1 19
245 53.55 wind 9.0 14400 > th dose independent rect. 1 1
247 53.55 wind 9.0 14400 > th dose dependent rect. 1 1
253 53.60 humidity 90.0 90 > th dose independent rect. 18 1
255 53.60 wind 3.0 30 < th dose dependent rect. 20 1
256 53.60 humidity 90.0 90 > th dose dependent rect. 18 1
274 53.72 wind 3.0 10 < th dose independent rect. 20 1
318 53.98 temperature 20.0 90 < th dose independent rect. 4 16
329 54.00 temperature 20.0 10 < th dose independent rect. 5 16
332 54.00 temperature 30.0 30 < th dose dependent rect. 5 16
379 54.20 temperature 25.0 270 < th dose dependent rect. 1 19
413 54.30 humidity 70.0 30 > th dose dependent rect. 19 2
442 54.36 humidity 90.0 1440 < th dose dependent rect. 3 4
460 54.40 atmosphere 1005.0 30 > th dose independent rect. 19 2
518 54.47 temperature 25.0 30 < th dose independent rect. 2 1
523 54.48 temperature 30.0 30 < th dose dependent rect. 2 1
529 54.49 humidity 90.0 720 > th dose dependent rect. 19 1
537 54.50 wind 9.0 30 < th dose independent rect. 2 1
538 54.50 temperature 10.0 30 > th dose independent rect. 2 1
541 54.50 humidity 50.0 30 > th dose independent rect. 2 1
544 54.50 atmosphere 995.0 30 > th dose independent rect. 2 1
545 54.50 atmosphere 1010.0 30 < th dose independent rect. 2 1
547 54.50 radiation 1.0 30 < th dose independent rect. 2 1
552 54.50 precipitation 0.1 30 < th dose independent rect. 2 1
555 54.50 temperature 10.0 30 > th dose independent rect. 3 23
556 54.50 radiation 1.0 30 < th dose dependent rect. 2 1
561 54.50 precipitation 0.1 30 < th dose dependent rect. 2 1
566 54.51 wind 5.0 30 < th dose independent rect. 2 1
569 54.51 temperature 30.0 10 < th dose dependent rect. 20 1
570 54.51 humidity 50.0 30 > th dose dependent rect. 2 1
575 54.52 wind 9.0 30 < th dose dependent rect. 2 1
577 54.52 atmosphere 995.0 30 > th dose dependent rect. 2 1
578 54.52 atmosphere 1015.0 30 < th dose dependent rect. 2 1
582 54.53 temperature 10.0 30 > th dose dependent rect. 2 1
598 54.55 humidity 80.0 1440 > th dose independent rect. 5 1
604 54.55 humidity 90.0 1440 < th dose dependent rect. 5 2
611 54.56 humidity 90.0 270 < th dose dependent rect. 5 1
629 54.58 temperature 10.0 1440 > th dose independent rect. 22 8
632 54.58 temperature 30.0 1440 < th dose independent rect. 22 8
636 54.58 humidity 50.0 1440 > th dose independent rect. 22 8
643 54.58 atmosphere 995.0 1440 > th dose independent rect. 22 8
644 54.58 radiation 20.0 1440 < th dose independent rect. 22 8
653 54.58 temperature 10.0 1440 > th dose independent rect. 6 16
703 54.63 temperature 20.0 270 > th dose independent rect. 24 11
707 54.63 atmosphere 995.0 30 > th dose dependent rect. 5 16
717 54.65 radiation 1.0 10 < th dose dependent rect. 5 16
719 54.66 precipitation 0.1 30 < th dose independent rect. 5 16
721 54.66 precipitation 0.1 30 < th dose dependent rect. 5 16
724 54.67 humidity 90.0 720 > th dose independent rect. 19 1
727 54.67 atmosphere 1000.0 30 > th dose independent rect. 21 8
730 54.67 atmosphere 995.0 30 > th dose independent rect. 5 16
734 54.68 temperature 10.0 30 > th dose independent rect. 21 8
735 54.68 temperature 30.0 30 < th dose independent rect. 21 8
736 54.68 humidity 50.0 30 > th dose independent rect. 21 8
740 54.68 radiation 1.0 30 < th dose independent rect. 21 8
745 54.68 temperature 10.0 30 > th dose independent rect. 5 16
747 54.68 atmosphere 1015.0 30 < th dose independent rect. 5 16
752 54.68 radiation 1.0 30 < th dose dependent rect. 21 8
758 54.69 wind 1.0 30 > th dose independent rect. 2 1
760 54.69 wind 9.0 30 < th dose independent rect. 21 8
761 54.69 precipitation 0.1 30 < th dose independent rect. 21 8
770 54.69 precipitation 0.1 30 < th dose dependent rect. 21 8
787 54.71 humidity 90.0 270 > th dose dependent rect. 16 4
792 54.72 wind 1.0 14400 > th dose independent rect. 5 8
812 54.73 humidity 50.0 30 > th dose dependent rect. 21 8
815 54.74 wind 1.0 30 > th dose independent rect. 5 16
833 54.75 humidity 80.0 270 < th dose independent rect. 5 1
920 54.78 wind 1.0 14400 < th dose independent rect. 4 9
959 54.81 humidity 90.0 270 > th dose dependent rect. 12 8
964 54.82 humidity 80.0 720 > th dose independent rect. 24 8
970 54.82 atmosphere 1005.0 10 > th dose dependent rect. 19 2