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Os01g0278000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : VQ domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0382) R2 : 0.52
β1 : -1.9 (0.142) R2dD : 0.201 R2D : 0.0532
β2 : 1.22 (0.0985) R2dC : 0.169 R2C : 0.181
β3 : 1.33 (0.15) R2dE : 0.0939 R2E : 0.0934
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.77 (0.0822) R2dN8 : 0.128 R2N8 : 0.0672
σ : 0.714
deviance : 235.12
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C
peak time of C : 3.44
E
wheather : humidity
threshold : 75
memory length : 1163
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
232.75 0.717 10.6 -1.99 1.2 1.48 0.59 -1.34 -0.782 3.6 75 1143 -- --
234.86 0.714 10.6 -1.9 1.24 1.37 0.536 -- -0.774 3.52 75.15 1149 -- --
233.66 0.712 10.6 -1.99 1.21 1.44 -- -1.17 -0.777 3.45 74.41 1166 -- --
235.12 0.714 10.6 -1.9 1.22 1.33 -- -- -0.77 3.44 75 1163 -- --
310.1 0.82 10.7 -2.04 -- 1.9 -- -1.41 -0.769 -- 78.13 1158 -- --
273.46 0.775 10.7 -1.65 1.41 -- 0.431 -- -0.862 2.97 -- -- -- --
274.08 0.775 10.7 -1.66 1.41 -- -- -- -0.864 2.94 -- -- -- --
312.4 0.823 10.6 -1.92 -- 1.78 -- -- -0.754 -- 78.56 1163 -- --
324.66 0.839 10.6 -- 1.2 1.03 -- -- -0.678 3.27 89.58 1213 -- --
388.56 0.921 10.6 -1.6 -- -- -- -- -0.828 -- -- -- -- --
346.47 0.871 10.6 -- 1.38 -- -- -- -0.68 2.93 -- -- -- --
396.4 0.927 10.6 -- -- 1.65 -- -- -0.672 -- 91.65 1151 -- --
455.85 0.997 10.6 -- -- -- -- -- -0.65 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 226.93 radiation 20 1440 < th dose dependent rect. 11 1
2 227.21 radiation 40 1440 < th dose dependent rect. 11 1
3 228.15 atmosphere 995 43200 < th dose dependent sin 16 NA
4 228.49 radiation 1 1440 > th dose dependent rect. 11 1
5 228.53 atmosphere 995 43200 < th dose dependent rect. 13 13
7 228.80 atmosphere 995 43200 < th dose dependent rect. 12 15
13 229.57 atmosphere 995 43200 > th dose independent rect. 17 20
14 229.86 radiation 20 1440 < th dose independent rect. 11 1
21 230.48 atmosphere 995 43200 > th dose independent rect. 21 18
25 230.60 atmosphere 995 43200 < th dose independent rect. 17 19
26 230.61 atmosphere 995 43200 < th dose independent rect. 17 22
34 231.71 humidity 60 14400 > th dose independent rect. 3 5
35 231.89 atmosphere 995 43200 < th dose independent rect. 21 19
51 232.52 radiation 20 14400 < th dose independent rect. 3 3
55 232.90 radiation 10 1440 > th dose dependent rect. 15 21
57 233.01 atmosphere 995 43200 > th dose independent sin 5 NA
63 233.38 humidity 60 14400 > th dose independent rect. 1 7
65 233.48 radiation 20 4320 > th dose dependent rect. 16 16
66 233.54 humidity 70 1440 < th dose independent rect. 17 20
68 233.72 humidity 70 1440 > th dose independent rect. 18 19
69 233.75 radiation 30 4320 < th dose independent rect. 6 2
70 233.80 humidity 70 1440 > th dose independent rect. 10 3
87 234.20 humidity 70 1440 < th dose independent rect. 10 3
93 234.32 radiation 30 4320 < th dose independent rect. 21 11
96 234.44 radiation 20 4320 > th dose dependent rect. 6 2
110 234.47 wind 5 43200 > th dose independent rect. 18 12
117 234.57 radiation 10 1440 > th dose dependent rect. 7 5
118 234.58 wind 5 43200 > th dose dependent rect. 18 12
125 234.67 wind 5 43200 < th dose independent rect. 18 12
128 234.73 radiation 40 1440 < th dose independent rect. 11 1
154 234.84 humidity 70 1440 < th dose dependent rect. 10 7
155 234.87 radiation 30 4320 < th dose independent rect. 24 8
157 234.87 wind 5 43200 > th dose independent rect. 17 16
160 234.92 wind 5 43200 < th dose independent rect. 17 16
168 235.10 radiation 30 4320 < th dose independent rect. 2 6
188 235.24 radiation 30 1440 < th dose independent rect. 15 21
190 235.26 humidity 80 1440 < th dose dependent rect. 7 7
193 235.29 radiation 30 1440 > th dose independent rect. 9 3
194 235.30 radiation 20 4320 > th dose independent rect. 6 2
210 235.31 humidity 80 1440 < th dose dependent rect. 9 5
233 235.43 radiation 20 1440 > th dose independent rect. 16 20
239 235.48 atmosphere 995 43200 < th dose independent sin 4 NA
240 235.48 humidity 70 1440 < th dose dependent sin 1 NA
244 235.49 humidity 70 1440 < th dose dependent rect. 15 23
248 235.52 wind 5 43200 > th dose dependent sin 11 NA
263 235.53 wind 5 43200 > th dose dependent rect. 17 16
266 235.57 wind 5 43200 > th dose independent sin 11 NA
267 235.57 wind 5 43200 < th dose independent sin 11 NA
283 235.66 radiation 40 1440 < th dose independent rect. 9 3
320 235.75 humidity 70 1440 < th dose dependent rect. 10 23
325 235.76 humidity 70 1440 < th dose dependent rect. 13 23
364 235.86 radiation 30 1440 > th dose independent rect. 11 1
365 235.86 humidity 70 1440 < th dose dependent no NA NA
458 236.04 humidity 60 1440 < th dose independent rect. 14 1
481 236.11 humidity 80 1440 < th dose dependent rect. 19 19
496 236.23 wind 5 43200 < th dose independent rect. 17 21
500 236.27 radiation 10 1440 < th dose independent rect. 15 2
509 236.30 wind 5 43200 > th dose independent rect. 17 21
533 236.44 humidity 60 1440 < th dose independent rect. 14 3
538 236.48 wind 7 43200 > th dose dependent rect. 19 1
540 236.50 wind 7 4320 > th dose independent rect. 18 1
543 236.52 humidity 60 1440 < th dose independent rect. 10 7
546 236.52 radiation 30 1440 > th dose dependent sin 6 NA
580 236.64 humidity 60 1440 > th dose independent rect. 10 7
599 236.67 humidity 60 1440 > th dose independent rect. 14 3
616 236.69 radiation 40 1440 < th dose dependent rect. 15 21
617 236.70 radiation 10 1440 > th dose dependent sin 5 NA
624 236.73 humidity 60 1440 < th dose independent rect. 14 22
629 236.74 radiation 1 1440 > th dose dependent rect. 7 10
672 236.91 humidity 60 1440 < th dose independent rect. 8 9
697 236.94 humidity 60 1440 > th dose independent rect. 14 22
705 236.97 radiation 10 4320 < th dose dependent rect. 3 2
736 237.03 humidity 60 1440 < th dose independent rect. 18 23
739 237.04 humidity 60 1440 > th dose independent rect. 6 11
757 237.07 wind 7 43200 > th dose independent rect. 19 1
789 237.10 humidity 60 1440 > th dose independent rect. 21 20
790 237.11 humidity 70 1440 > th dose independent rect. 11 1
797 237.12 humidity 60 1440 > th dose independent rect. 2 15
841 237.16 radiation 10 1440 > th dose dependent no NA NA
958 237.21 humidity 60 1440 > th dose independent rect. 18 23
996 237.25 radiation 30 1440 > th dose dependent no NA NA
998 237.25 radiation 30 1440 > th dose dependent rect. 7 10