Os01g0277900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Heat shock protein DnaJ, N-terminal domain containing protein.
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Os01g0277900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Heat shock protein DnaJ, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.86 | 0.318 | 8.04 | -0.953 | 0.778 | 4.55 | -0.349 | -23.5 | -0.218 | 4.88 | 1001 | 300 | -- | -- |
| 47.33 | 0.323 | 7.9 | -0.172 | 0.784 | 0.502 | -0.322 | -- | -0.217 | 4.83 | 1001 | 300 | -- | -- |
| 46.18 | 0.316 | 8.04 | -0.941 | 0.776 | 4.48 | -- | -23.1 | -0.216 | 4.89 | 1001 | 295 | -- | -- |
| 47.05 | 0.319 | 7.9 | -0.155 | 0.786 | 0.828 | -- | -- | -0.22 | 4.86 | 997.6 | 212 | -- | -- |
| 77.8 | 0.411 | 8.06 | -0.976 | -- | 4.82 | -- | -25.5 | -0.201 | -- | 1001 | 336 | -- | -- |
| 49.68 | 0.33 | 7.91 | -0.127 | 0.78 | -- | -0.334 | -- | -0.234 | 4.84 | -- | -- | -- | -- |
| 49.97 | 0.331 | 7.91 | -0.126 | 0.778 | -- | -- | -- | -0.233 | 4.84 | -- | -- | -- | -- |
| 78.14 | 0.412 | 7.91 | -0.131 | -- | 0.828 | -- | -- | -0.201 | -- | 997.2 | 1002 | -- | -- |
| 47.68 | 0.322 | 7.9 | -- | 0.783 | 0.772 | -- | -- | -0.204 | 4.88 | 997.6 | 192 | -- | -- |
| 81.93 | 0.423 | 7.91 | -0.0968 | -- | -- | -- | -- | -0.213 | -- | -- | -- | -- | -- |
| 50.38 | 0.332 | 7.9 | -- | 0.776 | -- | -- | -- | -0.219 | 4.84 | -- | -- | -- | -- |
| 78.58 | 0.413 | 7.91 | -- | -- | 0.802 | -- | -- | -0.185 | -- | 997.2 | 1002 | -- | -- |
| 82.18 | 0.423 | 7.91 | -- | -- | -- | -- | -- | -0.202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.77 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 2 | 45.07 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 3 | 45.18 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 4 | 45.27 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 12 | 45.39 | atmosphere | 1010 | 1440 | < th | dose independent | rect. | 6 | 2 |
| 13 | 45.40 | atmosphere | 1010 | 1440 | < th | dose independent | rect. | 6 | 4 |
| 50 | 45.58 | atmosphere | 1010 | 1440 | > th | dose independent | rect. | 6 | 2 |
| 51 | 45.58 | atmosphere | 1010 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 77 | 45.63 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 79 | 45.64 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 91 | 45.67 | atmosphere | 1010 | 1440 | > th | dose independent | rect. | 1 | 9 |
| 97 | 45.68 | atmosphere | 1010 | 1440 | > th | dose independent | rect. | 3 | 7 |
| 109 | 45.70 | atmosphere | 1010 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 116 | 45.70 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 21 | 20 |
| 119 | 45.71 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 130 | 45.72 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 174 | 45.77 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 24 | 3 |
| 190 | 45.78 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 192 | 45.79 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 215 | 45.81 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 11 | 21 |
| 219 | 45.81 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 242 | 45.84 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 5 |
| 258 | 45.86 | atmosphere | 1010 | 1440 | > th | dose independent | sin | 7 | NA |
| 259 | 45.86 | atmosphere | 1010 | 1440 | < th | dose independent | sin | 5 | NA |
| 283 | 45.87 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 21 | 14 |
| 298 | 45.88 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 317 | 45.89 | wind | 7 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 336 | 45.90 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 23 | 10 |
| 344 | 45.90 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 21 | 14 |
| 397 | 45.93 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 6 |
| 417 | 45.94 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 19 |
| 421 | 45.95 | atmosphere | 1010 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 494 | 45.99 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 8 |
| 544 | 46.01 | atmosphere | 1000 | 270 | < th | dose dependent | no | NA | NA |
| 545 | 46.01 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 567 | 46.03 | atmosphere | 1010 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 568 | 46.03 | wind | 1 | 1440 | > th | dose independent | rect. | 2 | 3 |
| 569 | 46.03 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 4 |
| 595 | 46.04 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 667 | 46.08 | wind | 7 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 683 | 46.08 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 22 | 22 |
| 762 | 46.12 | wind | 1 | 4320 | < th | dose dependent | rect. | 4 | 3 |
| 800 | 46.14 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 851 | 46.15 | atmosphere | 1000 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 856 | 46.16 | atmosphere | 1000 | 270 | > th | dose independent | no | NA | NA |
| 882 | 46.16 | atmosphere | 1000 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 885 | 46.16 | atmosphere | 1000 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 887 | 46.17 | atmosphere | 1000 | 270 | < th | dose independent | no | NA | NA |
| 902 | 46.17 | atmosphere | 1000 | 30 | < th | dose independent | rect. | 13 | 20 |
| 907 | 46.17 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 8 |
| 910 | 46.17 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 13 |
| 916 | 46.17 | atmosphere | 1000 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 917 | 46.17 | atmosphere | 1000 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 920 | 46.18 | humidity | 80 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 921 | 46.18 | humidity | 60 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 963 | 46.19 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 984 | 46.20 | wind | 1 | 4320 | > th | dose independent | rect. | 4 | 3 |