Os01g0277100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0277100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 149.3 | 0.574 | 6.19 | 0.891 | 2.4 | -3.82 | -1.44 | 1.55 | -0.0721 | 11.1 | 8.739 | 345 | 1.37 | 12.7 |
| 149.59 | 0.57 | 6.2 | 0.751 | 2.44 | -3.81 | -0.546 | -- | -0.101 | 11 | 7.854 | 342 | 1.32 | 12.8 |
| 150.99 | 0.572 | 6.21 | 0.66 | 2.49 | -3.65 | -- | -0.172 | -0.13 | 10.8 | 5.958 | 365 | 0.917 | 12.9 |
| 150.38 | 0.571 | 6.19 | 0.783 | 2.68 | -4.04 | -- | -- | -0.0939 | 10.9 | 6.723 | 342 | 1.31 | 12.8 |
| 174.29 | 0.615 | 6.31 | 0.566 | -- | -1.77 | -- | -0.249 | -0.242 | -- | 20.69 | 339 | 0.817 | 13 |
| 217.45 | 0.691 | 6.34 | 0.411 | 0.394 | -- | 1.01 | -- | -0.407 | 23.6 | -- | -- | -- | -- |
| 221.76 | 0.697 | 6.34 | 0.372 | 0.394 | -- | -- | -- | -0.41 | 23.1 | -- | -- | -- | -- |
| 173.13 | 0.613 | 6.28 | 0.597 | -- | -1.69 | -- | -- | -0.211 | -- | 21.1 | 334 | 0.661 | 13.3 |
| 164.31 | 0.597 | 6.22 | -- | 2.67 | -3.98 | -- | -- | -0.166 | 10.8 | 6.566 | 340 | 1.35 | 12.7 |
| 231.44 | 0.711 | 6.33 | 0.381 | -- | -- | -- | -- | -0.407 | -- | -- | -- | -- | -- |
| 225.4 | 0.702 | 6.35 | -- | 0.398 | -- | -- | -- | -0.451 | 23.1 | -- | -- | -- | -- |
| 182.45 | 0.629 | 6.29 | -- | -- | -1.61 | -- | -- | -0.272 | -- | 21.1 | 317 | 0.583 | 13.4 |
| 235.27 | 0.716 | 6.34 | -- | -- | -- | -- | -- | -0.449 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 156.19 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 13 |
| 13 | 163.96 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 27 | 165.86 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 6 |
| 32 | 166.68 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 2 | 5 |
| 72 | 171.03 | temperature | 30.0 | 10 | < th | dose independent | rect. | 18 | 18 |
| 78 | 171.46 | temperature | 20.0 | 270 | > th | dose dependent | sin | 4 | NA |
| 84 | 172.13 | temperature | 10.0 | 270 | > th | dose dependent | sin | 3 | NA |
| 101 | 173.32 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 9 | 7 |
| 107 | 173.69 | temperature | 30.0 | 30 | < th | dose independent | rect. | 7 | 5 |
| 109 | 173.77 | temperature | 25.0 | 270 | < th | dose independent | rect. | 5 | 7 |
| 114 | 174.26 | temperature | 30.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 118 | 174.37 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 126 | 174.71 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 10 | 6 |
| 130 | 174.82 | temperature | 30.0 | 30 | < th | dose independent | rect. | 16 | 20 |
| 134 | 174.97 | temperature | 25.0 | 270 | > th | dose independent | rect. | 10 | 5 |
| 158 | 175.69 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 3 |
| 160 | 175.78 | temperature | 25.0 | 270 | > th | dose independent | rect. | 1 | 14 |
| 194 | 176.72 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 204 | 176.85 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 2 | 16 |
| 211 | 177.05 | temperature | 25.0 | 270 | < th | dose independent | rect. | 7 | 2 |
| 219 | 177.19 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 297 | 178.57 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 14 |
| 383 | 179.92 | temperature | 25.0 | 720 | < th | dose dependent | sin | 6 | NA |
| 416 | 180.38 | temperature | 30.0 | 30 | < th | dose independent | rect. | 9 | 3 |
| 452 | 180.85 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 12 | 6 |
| 508 | 181.52 | radiation | 1.0 | 30 | > th | dose independent | rect. | 7 | 5 |
| 535 | 181.79 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 12 | 4 |
| 576 | 182.05 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 579 | 182.05 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 580 | 182.05 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 19 |
| 604 | 182.29 | temperature | 15.0 | 30 | > th | dose independent | rect. | 12 | 19 |
| 630 | 182.52 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 7 | 5 |
| 631 | 182.52 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 7 | 5 |
| 636 | 182.58 | wind | 1.0 | 30 | > th | dose independent | rect. | 7 | 5 |
| 639 | 182.59 | temperature | 10.0 | 30 | > th | dose independent | rect. | 7 | 5 |
| 641 | 182.59 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 7 | 5 |
| 642 | 182.59 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 7 | 5 |
| 666 | 182.77 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 12 | 6 |
| 674 | 182.83 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 12 | 19 |
| 676 | 182.83 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 12 | 19 |
| 682 | 182.90 | temperature | 30.0 | 10 | < th | dose independent | rect. | 7 | 16 |
| 696 | 183.04 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 716 | 183.15 | wind | 9.0 | 30 | < th | dose independent | rect. | 7 | 5 |
| 747 | 183.45 | wind | 9.0 | 30 | < th | dose independent | rect. | 12 | 19 |
| 778 | 183.72 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 782 | 183.72 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 18 |
| 785 | 183.72 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 19 | 18 |
| 840 | 184.15 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 18 | 18 |
| 848 | 184.19 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 7 |
| 869 | 184.25 | temperature | 25.0 | 10 | > th | dose independent | rect. | 12 | 4 |
| 870 | 184.25 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 6 |
| 872 | 184.28 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 12 | 6 |
| 873 | 184.28 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 12 | 6 |
| 891 | 184.44 | temperature | 10.0 | 10 | > th | dose independent | rect. | 12 | 6 |
| 894 | 184.44 | temperature | 10.0 | 10 | > th | dose independent | rect. | 18 | 18 |
| 895 | 184.44 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 18 | 18 |
| 917 | 184.56 | temperature | 25.0 | 270 | < th | dose independent | sin | 2 | NA |
| 936 | 184.69 | wind | 9.0 | 30 | < th | dose independent | rect. | 18 | 18 |
| 946 | 184.79 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 12 | 6 |
| 957 | 184.91 | wind | 9.0 | 30 | < th | dose independent | rect. | 12 | 6 |
| 960 | 184.95 | temperature | 30.0 | 10 | < th | dose independent | rect. | 7 | 14 |
| 964 | 184.98 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 12 | 19 |
| 968 | 185.01 | temperature | 30.0 | 10 | < th | dose independent | rect. | 9 | 14 |
| 982 | 185.16 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 6 |
| 995 | 185.24 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 8 |