Os01g0276900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0276900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 364.7 | 0.897 | 7.96 | -1.33 | 3.62 | -2.4 | 0.743 | -1.83 | -1.6 | 9.04 | 12.11 | 10 | -- | -- |
| 371.64 | 0.898 | 7.96 | -1.34 | 3.64 | -2.37 | 2.63 | -- | -1.59 | 9.12 | 12.41 | 9 | -- | -- |
| 365.44 | 0.89 | 7.96 | -1.31 | 3.6 | -2.42 | -- | -2.26 | -1.59 | 9 | 12.1 | 9 | -- | -- |
| 395.17 | 0.926 | 7.96 | -1.27 | 3.56 | -2.48 | -- | -- | -1.6 | 8.98 | 12.81 | 9 | -- | -- |
| 694.19 | 1.23 | 8.08 | -1.28 | -- | -4.32 | -- | -2.07 | -1.67 | -- | 7.438 | 4 | -- | -- |
| 462.89 | 1.01 | 7.9 | -1.36 | 5.86 | -- | 2.8 | -- | -1.54 | 10.2 | -- | -- | -- | -- |
| 494.33 | 1.04 | 7.89 | -1.25 | 5.85 | -- | -- | -- | -1.53 | 10.2 | -- | -- | -- | -- |
| 717.75 | 1.25 | 8.07 | -1.2 | -- | -4.33 | -- | -- | -1.64 | -- | 7.39 | 4 | -- | -- |
| 436.83 | 0.973 | 7.94 | -- | 3.52 | -2.47 | -- | -- | -1.46 | 9.05 | 11.7 | 8 | -- | -- |
| 2574.43 | 2.37 | 8.05 | -1.33 | -- | -- | -- | -- | -1.55 | -- | -- | -- | -- | -- |
| 535.28 | 1.08 | 7.86 | -- | 5.86 | -- | -- | -- | -1.4 | 10.2 | -- | -- | -- | -- |
| 755.73 | 1.28 | 8.04 | -- | -- | -4.34 | -- | -- | -1.49 | -- | 7.553 | 3 | -- | -- |
| 2621.2 | 2.39 | 8.02 | -- | -- | -- | -- | -- | -1.4 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 349.23 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 11 |
| 6 | 357.03 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 17 | 365.34 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 12 |
| 29 | 366.61 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 10 | 23 |
| 37 | 367.87 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 42 | 368.39 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 44 | 368.49 | radiation | 10.0 | 10 | < th | dose dependent | no | NA | NA |
| 54 | 370.51 | temperature | 25.0 | 10 | > th | dose independent | rect. | 5 | 11 |
| 57 | 370.79 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 11 |
| 154 | 379.86 | radiation | 10.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 168 | 380.47 | humidity | 90.0 | 30 | < th | dose independent | rect. | 6 | 10 |
| 170 | 380.70 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 22 | 18 |
| 188 | 381.47 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 19 |
| 214 | 382.70 | radiation | 1.0 | 30 | > th | dose independent | sin | 0 | NA |
| 228 | 383.48 | radiation | 1.0 | 30 | < th | dose independent | sin | 0 | NA |
| 231 | 383.62 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 24 | 21 |
| 243 | 384.29 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 272 | 385.72 | temperature | 25.0 | 270 | < th | dose independent | rect. | 18 | 7 |
| 288 | 386.70 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 17 |
| 329 | 388.32 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 11 | 10 |
| 336 | 388.52 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 16 | 13 |
| 338 | 388.57 | humidity | 90.0 | 30 | < th | dose independent | rect. | 2 | 14 |
| 344 | 388.83 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 9 | 12 |
| 350 | 389.34 | temperature | 25.0 | 10 | < th | dose independent | rect. | 2 | 16 |
| 354 | 389.62 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 7 | 14 |
| 402 | 391.16 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 406 | 391.31 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 9 | 10 |
| 420 | 391.72 | radiation | 10.0 | 10 | < th | dose independent | rect. | 12 | 9 |
| 446 | 392.47 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 7 | 12 |
| 448 | 392.50 | radiation | 10.0 | 10 | < th | dose independent | rect. | 10 | 11 |
| 455 | 392.72 | radiation | 10.0 | 10 | < th | dose independent | rect. | 7 | 23 |
| 478 | 392.99 | radiation | 1.0 | 720 | < th | dose independent | rect. | 17 | 7 |
| 481 | 393.05 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 4 | 17 |
| 519 | 393.72 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 19 |
| 527 | 393.85 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 17 |
| 531 | 393.90 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 2 | 17 |
| 538 | 394.03 | temperature | 25.0 | 10 | < th | dose independent | rect. | 2 | 14 |
| 587 | 395.12 | radiation | 20.0 | 90 | < th | dose independent | rect. | 9 | 12 |
| 592 | 395.23 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 637 | 395.85 | temperature | 25.0 | 270 | > th | dose independent | rect. | 14 | 13 |
| 640 | 395.87 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 17 |
| 646 | 395.94 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 2 | 19 |
| 658 | 396.11 | temperature | 25.0 | 10 | < th | dose independent | rect. | 2 | 10 |
| 678 | 396.45 | radiation | 10.0 | 10 | < th | dose independent | rect. | 7 | 14 |
| 696 | 396.74 | temperature | 25.0 | 10 | < th | dose independent | rect. | 2 | 12 |
| 700 | 396.83 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 18 | 7 |
| 708 | 396.92 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 4 | 15 |
| 712 | 396.95 | radiation | 10.0 | 10 | > th | dose independent | sin | 20 | NA |
| 745 | 397.29 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 10 | 6 |
| 767 | 397.51 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 788 | 397.73 | radiation | 40.0 | 270 | < th | dose independent | rect. | 23 | 20 |
| 832 | 398.25 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 23 |
| 841 | 398.35 | radiation | 10.0 | 10 | < th | dose independent | rect. | 12 | 18 |
| 842 | 398.36 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 6 | 10 |
| 845 | 398.41 | humidity | 80.0 | 10 | < th | dose independent | rect. | 12 | 4 |
| 858 | 398.51 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 24 | 21 |
| 900 | 398.93 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 11 |
| 902 | 398.93 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 906 | 398.96 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 1 | 15 |
| 909 | 398.98 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 5 | 11 |
| 928 | 399.06 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 934 | 399.13 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 21 | 5 |
| 949 | 399.26 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 24 | 19 |
| 959 | 399.32 | radiation | 1.0 | 30 | < th | dose independent | rect. | 24 | 21 |
| 964 | 399.43 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 23 | 17 |
| 972 | 399.51 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 15 | 4 |
| 973 | 399.51 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 15 | 4 |
| 992 | 399.74 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 15 |