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Os01g0276500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Histidine biosynthesis bifunctional protein hisIE, chloroplast precursor [Includes: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (PRA-CH); Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (PRA-PH)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.87 | 0.252 | 11.2 | -0.411 | 0.532 | 0.881 | 0.21 | 0.0558 | -0.165 | 20.5 | 21.95 | 358 | -- | -- |
| 28.87 | 0.25 | 11.2 | -0.421 | 0.53 | 0.887 | 0.213 | -- | -0.167 | 20.5 | 22.08 | 357 | -- | -- |
| 28.99 | 0.251 | 11.2 | -0.399 | 0.526 | 0.881 | -- | 0.169 | -0.157 | 20.5 | 22.19 | 357 | -- | -- |
| 29.01 | 0.251 | 11.2 | -0.428 | 0.523 | 0.896 | -- | -- | -0.166 | 20.5 | 22.24 | 358 | -- | -- |
| 38.49 | 0.289 | 11.2 | -0.472 | -- | 1.22 | -- | -0.0637 | -0.183 | -- | 23.85 | 519 | -- | -- |
| 43.03 | 0.308 | 11.2 | -0.224 | 0.833 | -- | 0.527 | -- | -0.0227 | 19.2 | -- | -- | -- | -- |
| 43.77 | 0.31 | 11.2 | -0.235 | 0.834 | -- | -- | -- | -0.0218 | 19.3 | -- | -- | -- | -- |
| 38.51 | 0.289 | 11.2 | -0.487 | -- | 1.21 | -- | -- | -0.176 | -- | 23.76 | 517 | -- | -- |
| 33.53 | 0.27 | 11.2 | -- | 0.557 | 0.777 | -- | -- | -0.0983 | 20.3 | 22.59 | 355 | -- | -- |
| 80.61 | 0.42 | 11.2 | -0.25 | -- | -- | -- | -- | -0.036 | -- | -- | -- | -- | -- |
| 45.23 | 0.315 | 11.2 | -- | 0.836 | -- | -- | -- | 0.00445 | 19.2 | -- | -- | -- | -- |
| 44.39 | 0.31 | 11.2 | -- | -- | 1.13 | -- | -- | -0.102 | -- | 24.1 | 507 | -- | -- |
| 82.26 | 0.423 | 11.2 | -- | -- | -- | -- | -- | -0.00823 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.73 | temperature | 10 | 270 | > th | dose dependent | sin | 22 | NA |
| 3 | 28.81 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 21 |
| 9 | 28.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 16 |
| 10 | 28.96 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 11 |
| 20 | 29.07 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 24 | 29.16 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 16 |
| 33 | 29.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 18 |
| 42 | 29.27 | temperature | 15 | 720 | > th | dose dependent | sin | 1 | NA |
| 88 | 29.55 | temperature | 30 | 270 | < th | dose dependent | sin | 21 | NA |
| 115 | 29.63 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 169 | 29.79 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 220 | 29.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 225 | 29.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 4 |
| 227 | 29.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 236 | 29.97 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 241 | 29.97 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 303 | 30.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 4 |
| 330 | 30.15 | temperature | 30 | 720 | < th | dose dependent | sin | 0 | NA |
| 615 | 30.47 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 686 | 30.53 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 754 | 30.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 818 | 30.64 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 820 | 30.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 8 |
| 880 | 30.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 947 | 30.79 | temperature | 20 | 1440 | > th | dose dependent | sin | 20 | NA |
| 958 | 30.80 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 14 |
