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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0276300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Group 3 late embryogenesis abundant protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.78 (0.0235) R2 : 0.21
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.665 (0.0611) R2dC : 0.205 R2C : 0.205
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0713 (0.0495) R2dN8 : 0.00464 R2N8 : 0.00463
σ : 0.444
deviance : 90.07
__
_____
C
peak time of C : 16.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
82.92 0.428 3.78 0.0291 0.454 -0.369 0.331 -0.365 -0.0631 18.6 71.25 11 -- --
83.29 0.425 3.78 0.0258 0.47 -0.363 0.351 -- -0.0548 18.5 71.09 6 -- --
82.88 0.424 3.78 0.0231 0.451 -0.343 -- -0.457 -0.0656 18.5 72 8 -- --
83.59 0.426 3.78 0.0211 0.472 -0.361 -- -- -0.0536 18.4 71.1 6 -- --
92.2 0.447 3.77 -0.0189 -- -0.424 -- -0.517 -0.0965 -- 73 27 -- --
89.76 0.444 3.78 0.0548 0.664 -- 0.299 -- -0.0666 16.9 -- -- -- --
89.99 0.444 3.78 0.056 0.666 -- -- -- -0.0651 16.8 -- -- -- --
93.47 0.45 3.77 -0.00889 -- -0.461 -- -- -0.0812 -- 72.96 27 -- --
83.6 0.426 3.78 -- 0.472 -0.362 -- -- -0.0558 18.4 71.04 6 -- --
113.42 0.498 3.77 0.0311 -- -- -- -- -0.0823 -- -- -- -- --
90.07 0.444 3.78 -- 0.665 -- -- -- -0.0713 16.8 -- -- -- --
93.47 0.45 3.77 -- -- -0.461 -- -- -0.0802 -- 72.81 27 -- --
113.44 0.497 3.77 -- -- -- -- -- -0.0858 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.73 wind 3 720 > th dose dependent rect. 11 1
2 82.13 temperature 30 270 < th dose independent rect. 15 15
3 82.17 temperature 30 270 < th dose independent rect. 13 6
4 82.28 temperature 30 270 < th dose dependent rect. 13 6
6 82.35 atmosphere 1005 270 > th dose dependent rect. 15 4
7 82.41 wind 5 720 > th dose independent rect. 11 1
8 82.43 atmosphere 1005 270 > th dose dependent rect. 14 6
26 82.85 temperature 30 270 < th dose independent rect. 13 20
32 83.06 humidity 70 10 > th dose independent rect. 16 19
33 83.06 humidity 70 10 > th dose independent rect. 14 21
48 83.18 humidity 70 10 > th dose independent rect. 3 23
50 83.20 humidity 70 90 > th dose independent rect. 13 22
52 83.21 humidity 70 270 > th dose independent rect. 13 6
54 83.24 humidity 70 10 > th dose independent rect. 12 23
55 83.26 temperature 30 720 > th dose dependent rect. 14 1
59 83.35 temperature 30 720 > th dose independent rect. 15 1
63 83.36 humidity 70 10 > th dose independent rect. 24 23
67 83.40 temperature 25 90 > th dose dependent rect. 16 17
70 83.44 humidity 70 270 > th dose independent rect. 11 8
72 83.45 humidity 70 270 > th dose independent rect. 13 18
76 83.47 humidity 50 270 > th dose dependent rect. 13 6
78 83.48 humidity 70 30 > th dose independent rect. 3 20
84 83.51 humidity 70 90 > th dose independent rect. 15 20
96 83.60 wind 7 30 > th dose independent rect. 16 21
99 83.63 humidity 70 10 > th dose independent rect. 8 15
102 83.64 humidity 50 270 > th dose dependent rect. 13 20
103 83.65 temperature 30 720 > th dose independent rect. 14 3
117 83.68 humidity 70 90 > th dose independent rect. 3 18
121 83.69 temperature 25 270 > th dose dependent rect. 16 7
123 83.71 humidity 70 10 > th dose independent rect. 4 17
126 83.72 humidity 70 10 > th dose independent rect. 8 13
130 83.72 wind 7 30 > th dose dependent rect. 16 21
135 83.74 temperature 25 10 > th dose independent rect. 16 9
139 83.74 humidity 70 10 > th dose independent rect. 7 23
151 83.76 temperature 15 270 > th dose dependent rect. 8 16
152 83.76 wind 5 10 > th dose dependent rect. 19 19
168 83.80 temperature 25 10 < th dose dependent rect. 10 12
205 83.88 humidity 70 270 > th dose independent rect. 24 20
206 83.88 wind 7 720 > th dose dependent rect. 18 18
217 83.92 wind 9 30 < th dose independent rect. 11 23
220 83.92 wind 9 720 > th dose dependent rect. 22 13
225 83.93 humidity 70 10 > th dose dependent rect. 11 10
227 83.93 temperature 25 90 > th dose dependent rect. 16 13
236 83.95 wind 7 720 > th dose independent rect. 19 17
238 83.95 wind 5 720 > th dose dependent rect. 1 11
240 83.95 wind 7 720 > th dose dependent rect. 21 15
260 84.00 humidity 70 10 > th dose independent no NA NA
263 84.00 temperature 25 10 > th dose dependent rect. 16 10
283 84.02 wind 9 720 > th dose dependent rect. 1 10
288 84.02 temperature 25 10 > th dose dependent rect. 16 13
315 84.05 temperature 30 720 > th dose independent rect. 12 5
342 84.07 atmosphere 1005 30 > th dose dependent rect. 16 7
349 84.08 wind 7 30 > th dose independent rect. 19 18
363 84.09 wind 5 720 > th dose dependent rect. 6 6
382 84.10 wind 7 270 > th dose dependent rect. 15 21
383 84.11 humidity 70 10 > th dose independent sin 20 NA
388 84.11 wind 9 720 > th dose dependent rect. 9 2
398 84.11 radiation 10 270 < th dose dependent rect. 8 10
406 84.12 wind 7 30 > th dose dependent sin 8 NA
425 84.13 wind 7 720 > th dose independent rect. 1 11
437 84.14 atmosphere 1005 270 > th dose independent rect. 16 2
463 84.16 humidity 70 10 > th dose independent rect. 13 10
536 84.23 wind 7 270 > th dose dependent sin 9 NA
539 84.23 wind 3 1440 < th dose dependent rect. 2 11
547 84.24 temperature 20 720 > th dose dependent rect. 12 5
551 84.24 wind 7 30 > th dose dependent rect. 21 15
559 84.24 wind 7 270 > th dose dependent rect. 17 23
565 84.25 humidity 70 10 > th dose independent rect. 24 21
577 84.25 wind 9 30 > th dose dependent rect. 1 13
604 84.26 wind 7 270 > th dose independent rect. 15 21
605 84.26 wind 9 270 > th dose independent rect. 18 22
607 84.26 wind 1 1440 > th dose dependent rect. 2 4
608 84.26 wind 9 30 > th dose dependent rect. 10 4
609 84.26 wind 3 1440 < th dose dependent rect. 2 4
636 84.27 wind 9 30 > th dose dependent rect. 10 2
674 84.27 wind 3 1440 < th dose dependent rect. 20 16
675 84.27 wind 9 1440 < th dose dependent rect. 20 16
698 84.29 wind 9 10 > th dose independent rect. 11 3
703 84.29 wind 9 270 > th dose independent rect. 1 15
713 84.29 wind 9 1440 < th dose dependent rect. 2 10
727 84.30 wind 9 270 > th dose independent rect. 9 7
790 84.32 wind 9 10 > th dose independent rect. 11 1
798 84.32 wind 7 10 > th dose independent rect. 2 11
834 84.33 wind 9 90 > th dose dependent sin 0 NA
836 84.33 temperature 30 720 > th dose dependent sin 1 NA
860 84.33 wind 1 1440 > th dose dependent rect. 2 10
880 84.33 wind 1 1440 > th dose dependent rect. 20 16
888 84.33 radiation 10 270 < th dose dependent rect. 20 23
900 84.34 wind 7 10 > th dose independent rect. 4 9
974 84.36 wind 7 30 > th dose independent sin 8 NA