Os01g0276200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Porin, eukaryotic type family protein.
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Os01g0276200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Porin, eukaryotic type family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 140.12 | 0.556 | 9.08 | 1.54 | 2.21 | 1.1 | 0.625 | 0.757 | 0.288 | 18.2 | 1.883 | 218 | -- | -- |
| 141.32 | 0.554 | 9.08 | 1.55 | 2.21 | 1.1 | 0.674 | -- | 0.283 | 18.2 | 0.8769 | 217 | -- | -- |
| 140.99 | 0.553 | 9.08 | 1.53 | 2.21 | 1.11 | -- | 0.833 | 0.289 | 18.3 | 0.7113 | 217 | -- | -- |
| 142.62 | 0.556 | 9.08 | 1.53 | 2.22 | 1.1 | -- | -- | 0.288 | 18.2 | 0.5596 | 217 | -- | -- |
| 231.8 | 0.709 | 9.08 | 1.39 | -- | 2.78 | -- | 0.733 | 0.0732 | -- | -44.09 | 578 | -- | -- |
| 156.6 | 0.587 | 9.06 | 1.57 | 2.59 | -- | 0.874 | -- | 0.36 | 17.3 | -- | -- | -- | -- |
| 158.5 | 0.59 | 9.06 | 1.57 | 2.59 | -- | -- | -- | 0.364 | 17.3 | -- | -- | -- | -- |
| 232.55 | 0.71 | 9.08 | 1.37 | -- | 2.8 | -- | -- | 0.0619 | -- | -20.8 | 581 | -- | -- |
| 204.16 | 0.665 | 9.11 | -- | 2.09 | 1.25 | -- | -- | 0.115 | 18.4 | -0.001176 | 246 | -- | -- |
| 509.94 | 1.06 | 9.02 | 1.48 | -- | -- | -- | -- | 0.299 | -- | -- | -- | -- | -- |
| 223.32 | 0.699 | 9.1 | -- | 2.57 | -- | -- | -- | 0.189 | 17.3 | -- | -- | -- | -- |
| 281.74 | 0.782 | 9.11 | -- | -- | 2.85 | -- | -- | -0.0931 | -- | -11.44 | 581 | -- | -- |
| 567.64 | 1.11 | 9.06 | -- | -- | -- | -- | -- | 0.135 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.39 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 2 | 124.69 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 7 |
| 5 | 125.06 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 6 |
| 11 | 126.41 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 19 |
| 12 | 126.43 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 13 | 126.71 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 14 | 126.73 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 7 |
| 31 | 127.70 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 35 | 127.79 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 46 | 128.37 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 52 | 128.46 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 19 |
| 57 | 128.57 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 59 | 128.59 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 62 | 128.74 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 19 |
| 63 | 128.74 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 19 |
| 64 | 128.79 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 65 | 128.82 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 66 | 128.82 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 67 | 128.82 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 71 | 128.82 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 76 | 128.82 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 77 | 128.82 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 82 | 128.84 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 6 |
| 83 | 128.84 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 84 | 128.86 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 6 |
| 95 | 129.14 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 97 | 129.16 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 131 | 129.46 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 21 |
| 132 | 129.46 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 21 |
| 133 | 129.50 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 21 |
| 148 | 129.74 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 16 | 16 |
| 150 | 129.75 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 152 | 129.75 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 153 | 129.75 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 155 | 129.75 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 5 |
| 156 | 129.75 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 5 |
| 157 | 129.75 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 19 |
| 177 | 129.99 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 179 | 130.02 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 190 | 130.15 | radiation | 20.0 | 270 | < th | dose independent | rect. | 17 | 15 |
| 196 | 130.19 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 5 |
| 197 | 130.19 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 200 | 130.22 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 205 | 130.31 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 207 | 130.34 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 211 | 130.39 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 17 |
| 230 | 130.60 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 8 |
| 234 | 130.62 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 263 | 130.79 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 301 | 130.96 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 308 | 131.01 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 311 | 131.02 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 15 |
| 317 | 131.06 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 18 |
| 319 | 131.06 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 332 | 131.15 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 15 |
| 335 | 131.16 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 348 | 131.22 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 10 |
| 349 | 131.22 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 351 | 131.25 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 396 | 131.41 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 419 | 131.59 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 21 |
| 425 | 131.62 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 447 | 131.69 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 3 |
| 450 | 131.74 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 454 | 131.75 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 455 | 131.76 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 19 |
| 503 | 131.94 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 518 | 132.10 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 22 | 5 |
| 520 | 132.12 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 542 | 132.23 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 544 | 132.25 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 10 |
| 568 | 132.30 | wind | 9.0 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 580 | 132.36 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 608 | 132.42 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 609 | 132.42 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 610 | 132.42 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 611 | 132.42 | radiation | 40.0 | 270 | < th | dose independent | rect. | 17 | 14 |
| 622 | 132.46 | humidity | 80.0 | 270 | < th | dose independent | rect. | 8 | 7 |
| 637 | 132.54 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 19 |
| 642 | 132.58 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 22 | 5 |
| 643 | 132.58 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 652 | 132.63 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 14 |
| 653 | 132.64 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 9 |
| 685 | 132.79 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 6 | 3 |
| 699 | 132.84 | wind | 9.0 | 270 | < th | dose dependent | rect. | 22 | 4 |
| 702 | 132.85 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 717 | 132.91 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 14 |
| 745 | 133.00 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 751 | 133.02 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 22 |
| 763 | 133.06 | wind | 7.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 765 | 133.06 | temperature | 10.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 767 | 133.06 | temperature | 30.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 768 | 133.06 | humidity | 50.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 770 | 133.06 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 771 | 133.06 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 772 | 133.06 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 21 |
| 788 | 133.14 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 6 | 3 |
| 823 | 133.24 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 6 | 3 |
| 826 | 133.24 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 840 | 133.27 | wind | 1.0 | 270 | > th | dose independent | rect. | 22 | 5 |
| 865 | 133.33 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 881 | 133.40 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 22 | 8 |
| 910 | 133.49 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 930 | 133.51 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 933 | 133.51 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 934 | 133.51 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 937 | 133.51 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |