Os01g0275300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os01g0275300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.65 | 0.296 | 13.7 | -0.404 | 1.22 | -0.408 | 0.337 | -0.181 | 0.043 | 20.4 | 25 | 266 | -- | -- |
| 39.76 | 0.294 | 13.7 | -0.448 | 1.21 | -0.421 | 0.332 | -- | 0.024 | 20.3 | 24.9 | 266 | -- | -- |
| 39.99 | 0.295 | 13.7 | -0.395 | 1.22 | -0.402 | -- | -0.243 | 0.0503 | 20.3 | 25 | 265 | -- | -- |
| 40.17 | 0.295 | 13.7 | -0.468 | 1.22 | -0.418 | -- | -- | 0.0243 | 20.3 | 24.94 | 265 | -- | -- |
| 99.57 | 0.465 | 13.7 | -0.423 | -- | -0.858 | -- | -0.257 | 0.0343 | -- | 25.7 | 383 | -- | -- |
| 48.37 | 0.326 | 13.7 | -0.335 | 1.41 | -- | 0.4 | -- | 0.227 | 19.8 | -- | -- | -- | -- |
| 48.83 | 0.327 | 13.7 | -0.345 | 1.41 | -- | -- | -- | 0.228 | 19.7 | -- | -- | -- | -- |
| 95.86 | 0.456 | 13.7 | -0.654 | -- | -1.05 | -- | -- | -0.132 | -- | 25.71 | 509 | -- | -- |
| 45.7 | 0.315 | 13.7 | -- | 1.25 | -0.34 | -- | -- | 0.112 | 20.2 | 25 | 263 | -- | -- |
| 156.18 | 0.584 | 13.7 | -0.362 | -- | -- | -- | -- | 0.208 | -- | -- | -- | -- | -- |
| 51.96 | 0.337 | 13.7 | -- | 1.41 | -- | -- | -- | 0.266 | 19.7 | -- | -- | -- | -- |
| 106.23 | 0.48 | 13.7 | -- | -- | -0.905 | -- | -- | -0.0707 | -- | 25.69 | 395 | -- | -- |
| 159.64 | 0.59 | 13.6 | -- | -- | -- | -- | -- | 0.248 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.86 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 27 | 32.69 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 34 | 33.21 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 37 | 33.26 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 18 |
| 45 | 33.61 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 46 | 33.62 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 66 | 34.01 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 162 | 35.18 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 7 |
| 167 | 35.22 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 244 | 35.95 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 245 | 35.95 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 18 |
| 265 | 36.07 | temperature | 25.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 288 | 36.19 | temperature | 25.0 | 270 | > th | dose independent | rect. | 22 | 16 |
| 296 | 36.24 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 298 | 36.24 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 305 | 36.28 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 307 | 36.28 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 4 | 17 |
| 325 | 36.37 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 334 | 36.41 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 7 |
| 341 | 36.43 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 364 | 36.52 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 388 | 36.62 | wind | 9.0 | 90 | < th | dose dependent | rect. | 4 | 4 |
| 403 | 36.68 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 404 | 36.68 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 9 |
| 407 | 36.68 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 436 | 36.80 | temperature | 25.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 452 | 36.87 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 454 | 36.87 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 455 | 36.87 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 458 | 36.87 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 459 | 36.87 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 460 | 36.87 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 464 | 36.87 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 481 | 36.91 | radiation | 30.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 482 | 36.91 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 486 | 36.93 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 487 | 36.93 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 491 | 36.96 | temperature | 25.0 | 270 | < th | dose independent | sin | 5 | NA |
| 494 | 36.97 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 499 | 36.99 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 508 | 37.01 | temperature | 30.0 | 90 | < th | dose dependent | sin | 1 | NA |
| 511 | 37.02 | wind | 5.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 521 | 37.05 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 7 |
| 542 | 37.09 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 21 | 7 |
| 573 | 37.17 | radiation | 30.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 575 | 37.17 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 20 |
| 577 | 37.17 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 586 | 37.19 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 18 |
| 587 | 37.19 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 599 | 37.22 | temperature | 25.0 | 270 | > th | dose independent | sin | 6 | NA |
| 600 | 37.22 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 605 | 37.23 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 610 | 37.25 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 612 | 37.25 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 613 | 37.25 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 616 | 37.25 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 617 | 37.25 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 619 | 37.25 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 623 | 37.25 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 23 |
| 628 | 37.26 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 638 | 37.28 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 720 | 37.44 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 5 |
| 723 | 37.44 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 751 | 37.48 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 754 | 37.49 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 4 | 5 |
| 761 | 37.51 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 779 | 37.53 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 821 | 37.62 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 828 | 37.63 | wind | 9.0 | 90 | < th | dose dependent | rect. | 21 | 7 |
| 829 | 37.63 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 21 | 7 |
| 831 | 37.64 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 5 |
| 851 | 37.67 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 7 |
| 864 | 37.69 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 880 | 37.70 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 17 |
| 884 | 37.71 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 8 |
| 893 | 37.72 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 897 | 37.73 | wind | 7.0 | 90 | < th | dose independent | rect. | 21 | 7 |
| 906 | 37.73 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 960 | 37.81 | temperature | 10.0 | 90 | > th | dose independent | rect. | 21 | 7 |
| 961 | 37.81 | temperature | 30.0 | 90 | < th | dose independent | rect. | 21 | 7 |
| 962 | 37.81 | humidity | 50.0 | 90 | > th | dose independent | rect. | 21 | 7 |
| 965 | 37.81 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 21 | 7 |
| 966 | 37.81 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 7 |
| 971 | 37.81 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 17 |
| 972 | 37.81 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 17 |
| 973 | 37.81 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 974 | 37.81 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 7 |