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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0274800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.01 (0.0747) R2 : 0.689
β1 : 3.43 (0.464) R2dD : 0.201 R2D : -0.136
β2 : 4.25 (0.141) R2dC : 0.687 R2C : 0.435
β3 : -3.78 (0.25) R2dE : 0.363 R2E : -0.157
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 10.2 (1.74) R2dD*E : 0.133 R2D*E : -0.156
γ1 : 0.0481 (0.157) R2dN8 : 0.00012 R2N8 : -0.00827
σ : 1.04
deviance : 494.56
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_____
C
peak time of C : 1.88
E
wheather : temperature
threshold : 24.91
memory length : 1184
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 10.5
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
487.14 1.04 5.01 3.38 4.2 -3.73 1.45 9.55 0.037 1.85 24.96 1203 10.6 --
545.2 1.09 5.27 1.3 4.17 -3.01 1.36 -- -0.138 1.26 21.37 2056 10 --
494.56 1.04 5.01 3.43 4.25 -3.78 -- 10.2 0.0481 1.88 24.91 1184 10.5 --
556.25 1.1 5.23 1.08 4 -2.94 -- -- -0.202 1.3 21.84 1974 9.93 --
1238.8 1.65 5.23 1.17 -- -4.26 -- 4.76 -0.508 -- 24.91 1184 10.5 --
786.84 1.32 5.35 0.276 3.5 -- 1.48 -- -0.784 1.66 -- -- -- --
795.48 1.32 5.35 0.227 3.5 -- -- -- -0.793 1.7 -- -- -- --
1244.3 1.65 5.28 0.76 -- -3.87 -- -- -0.603 -- 24.91 1184 10.5 --
583.73 1.13 5.25 -- 3.99 -2.58 -- -- -0.335 1.45 22.58 1940 8.55 --
1542.57 1.84 5.31 0.369 -- -- -- -- -0.714 -- -- -- -- --
796.84 1.32 5.36 -- 3.51 -- -- -- -0.818 1.7 -- -- -- --
1236.74 1.64 5.32 -- -- -4.36 -- -- -0.782 -- 26.59 5918 13.7 --
1546.17 1.84 5.32 -- -- -- -- -- -0.755 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 507.88 temperature 25 1440 > th dose dependent rect. 16 3
13 511.10 temperature 25 1440 > th dose dependent rect. 11 12
18 511.70 temperature 25 1440 > th dose dependent sin 17 NA
34 512.48 temperature 25 1440 > th dose dependent rect. 11 21
83 514.39 temperature 25 1440 > th dose dependent rect. 14 18
119 515.91 temperature 25 1440 > th dose dependent rect. 6 17
205 517.39 temperature 25 1440 > th dose dependent no NA NA
249 519.26 temperature 25 14400 > th dose dependent rect. 17 1
257 519.74 temperature 25 14400 > th dose dependent rect. 16 3
304 523.59 temperature 30 720 < th dose independent rect. 17 2
318 524.44 temperature 25 14400 > th dose dependent rect. 15 15
344 525.11 temperature 25 14400 > th dose independent rect. 19 1
356 525.93 temperature 30 720 < th dose independent rect. 17 9
381 526.78 temperature 25 14400 > th dose dependent sin 15 NA
396 527.61 temperature 25 14400 < th dose independent rect. 19 1
427 528.85 temperature 30 14400 < th dose independent rect. 14 17
432 528.90 temperature 30 14400 < th dose independent rect. 14 5
437 528.94 temperature 30 14400 < th dose independent rect. 14 8
438 528.94 temperature 30 14400 < th dose independent rect. 14 11
439 528.94 temperature 30 14400 < th dose independent rect. 14 13
455 529.26 temperature 30 14400 < th dose independent rect. 14 3
474 529.73 humidity 70 720 > th dose independent rect. 18 2
477 529.90 temperature 30 14400 > th dose independent rect. 14 5
494 530.14 temperature 30 14400 > th dose independent rect. 14 3
509 530.44 temperature 25 14400 > th dose independent sin 15 NA
517 530.51 temperature 25 14400 > th dose independent rect. 16 10
548 530.97 temperature 25 14400 > th dose independent rect. 17 4
551 531.03 temperature 25 14400 < th dose independent sin 15 NA
613 531.82 temperature 25 14400 < th dose independent rect. 16 6
782 533.28 temperature 25 14400 > th dose dependent rect. 2 22
796 533.36 temperature 30 720 < th dose independent rect. 16 14
813 533.44 temperature 25 14400 > th dose dependent rect. 21 23
828 533.46 temperature 25 14400 > th dose dependent no NA NA
944 533.93 temperature 25 14400 > th dose independent rect. 17 22
972 534.03 temperature 30 720 < th dose independent rect. 16 5
986 534.09 temperature 25 14400 < th dose independent rect. 18 22