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Os01g0274300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10 (0.0247) R2 : 0.422
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.585 (0.0641) R2dC : 0.103 R2C : 0.0881
β3 : 1.92 (0.121) R2dE : 0.335 R2E : 0.319
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00469 (0.0526) R2dN8 : -2.68e-06 R2N8 : -0.000877
σ : 0.462
deviance : 98.22
__
_____
C
peak time of C : 5.03
E
wheather : temperature
threshold : 16.66
memory length : 8293
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
93.79 0.455 9.86 0.451 0.583 0.55 0.148 -3.5 0.174 5.17 19 4312 -- --
99.56 0.465 9.96 0.492 0.577 1.73 0.234 -- 0.189 5.21 18.79 9671 -- --
93.84 0.451 9.86 0.453 0.584 0.55 -- -3.51 0.174 5.15 18.99 4297 -- --
96.38 0.457 9.98 0.344 0.565 2.02 -- -- 0.0607 4.95 16.6 9651 -- --
110.33 0.489 9.86 0.455 -- 0.392 -- -3.97 0.152 -- 18.41 4837 -- --
138.92 0.553 10.1 -0.719 0.553 -- 0.421 -- -0.23 5.25 -- -- -- --
139.36 0.553 10.1 -0.719 0.555 -- -- -- -0.232 5.17 -- -- -- --
113.57 0.496 10 0.326 -- 2.05 -- -- 0.0719 -- 16.7 9313 -- --
98.22 0.462 10 -- 0.585 1.92 -- -- 0.00469 5.03 16.66 8293 -- --
155.49 0.583 10.1 -0.699 -- -- -- -- -0.218 -- -- -- -- --
152.98 0.579 10 -- 0.543 -- -- -- -0.152 5.22 -- -- -- --
115.25 0.5 10 -- -- 1.79 -- -- 0.0129 -- 16.68 9313 -- --
168.4 0.606 10.1 -- -- -- -- -- -0.14 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 86.51 humidity 80 43200 > th dose independent rect. 17 12
4 86.74 wind 1 43200 > th dose independent rect. 14 1
10 87.17 humidity 80 43200 < th dose independent rect. 17 13
12 87.33 humidity 80 43200 > th dose independent sin 13 NA
17 87.38 wind 1 43200 < th dose dependent rect. 14 1
27 87.74 humidity 80 43200 < th dose independent sin 12 NA
33 87.87 wind 1 43200 < th dose dependent rect. 8 4
34 87.88 humidity 80 43200 > th dose independent rect. 20 6
39 88.01 humidity 80 43200 > th dose independent rect. 20 9
44 88.10 humidity 80 43200 > th dose independent rect. 21 4
46 88.13 humidity 80 43200 < th dose dependent rect. 23 1
52 88.24 humidity 80 43200 < th dose independent rect. 20 9
56 88.26 humidity 80 43200 < th dose dependent rect. 21 4
66 88.40 humidity 80 43200 < th dose independent rect. 20 6
74 88.46 wind 3 43200 < th dose dependent rect. 9 1
89 88.59 radiation 30 4320 < th dose independent rect. 16 16
108 88.83 humidity 80 43200 < th dose independent rect. 23 3
111 88.85 humidity 80 43200 < th dose independent rect. 23 7
139 89.15 wind 1 43200 < th dose independent rect. 14 1
148 89.25 wind 1 43200 < th dose dependent rect. 6 20
173 89.53 wind 3 43200 < th dose dependent rect. 8 7
176 89.57 humidity 80 43200 > th dose independent rect. 24 1
179 89.60 humidity 80 43200 < th dose independent rect. 3 2
183 89.61 radiation 30 4320 < th dose independent rect. 3 5
191 89.64 radiation 30 4320 < th dose independent rect. 1 7
197 89.66 radiation 30 4320 < th dose independent rect. 19 13
198 89.67 wind 3 43200 < th dose dependent rect. 6 10
203 89.71 radiation 30 4320 < th dose independent rect. 23 9
215 89.77 humidity 80 43200 > th dose independent rect. 24 5
217 89.79 humidity 80 43200 > th dose independent rect. 4 1
250 90.05 wind 1 43200 < th dose independent rect. 24 2
270 90.26 wind 3 43200 > th dose independent rect. 2 20
281 90.32 wind 3 43200 < th dose dependent rect. 6 17
289 90.35 wind 1 43200 < th dose dependent rect. 8 18
291 90.36 wind 3 43200 > th dose independent rect. 9 22
292 90.37 wind 3 43200 > th dose independent rect. 4 18
298 90.39 radiation 30 4320 > th dose dependent rect. 7 1
314 90.40 wind 3 43200 < th dose independent rect. 2 20
325 90.43 wind 3 43200 < th dose independent rect. 4 18
342 90.50 wind 3 43200 > th dose independent rect. 9 20
351 90.54 wind 3 43200 > th dose independent rect. 5 12
352 90.54 wind 3 43200 > th dose independent rect. 2 15
361 90.56 wind 3 43200 > th dose independent rect. 11 20
362 90.56 wind 3 43200 > th dose independent rect. 19 22
368 90.57 radiation 10 14400 < th dose dependent rect. 4 1
376 90.59 wind 3 43200 < th dose independent rect. 5 12
387 90.62 wind 3 43200 < th dose independent rect. 9 22
389 90.63 radiation 40 14400 < th dose independent rect. 15 1
393 90.64 wind 3 43200 > th dose independent rect. 12 22
405 90.67 wind 3 43200 > th dose independent rect. 6 22
407 90.68 wind 3 43200 < th dose independent rect. 2 15
410 90.68 wind 3 43200 < th dose independent rect. 19 22
425 90.71 wind 3 43200 < th dose independent rect. 9 20
453 90.79 wind 3 43200 > th dose independent sin 0 NA
457 90.80 wind 3 43200 > th dose independent no NA NA
475 90.83 wind 3 43200 < th dose independent sin 0 NA
504 90.88 wind 3 43200 < th dose independent rect. 20 1
518 90.90 wind 3 43200 < th dose independent rect. 9 15
529 90.91 wind 3 43200 < th dose independent rect. 6 22
535 90.92 wind 3 43200 < th dose independent rect. 11 23
540 90.94 wind 3 43200 < th dose independent rect. 11 20
552 90.95 wind 1 43200 < th dose dependent rect. 11 1
578 91.01 wind 3 43200 > th dose independent rect. 9 15
595 91.04 wind 3 43200 < th dose independent no NA NA
660 91.17 wind 3 43200 > th dose independent rect. 2 1
673 91.20 radiation 40 14400 < th dose independent rect. 15 6
693 91.23 humidity 70 43200 > th dose independent rect. 7 1
730 91.30 radiation 40 14400 < th dose independent rect. 15 9
735 91.30 wind 3 43200 < th dose dependent sin 0 NA
743 91.32 radiation 40 14400 < th dose independent rect. 15 11
747 91.33 wind 5 43200 < th dose dependent rect. 13 18
798 91.43 wind 5 43200 < th dose dependent rect. 13 21
805 91.45 wind 3 43200 > th dose independent sin 16 NA
838 91.51 wind 5 43200 < th dose dependent rect. 9 22
915 91.67 wind 3 43200 < th dose independent sin 17 NA
916 91.67 atmosphere 995 43200 > th dose independent rect. 13 5
945 91.71 humidity 80 43200 < th dose dependent rect. 7 1
954 91.73 atmosphere 995 43200 > th dose independent rect. 12 7
979 91.77 atmosphere 995 43200 < th dose independent rect. 13 5