Os01g0271700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0271700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.96 | 0.448 | 11.4 | -1.63 | 0.468 | 0.964 | 0.622 | -0.664 | -0.605 | 16.4 | 20.5 | 1474 | -- | -- |
| 91.73 | 0.446 | 11.4 | -1.5 | 0.476 | 1.04 | 0.608 | -- | -0.579 | 16.3 | 20.54 | 1406 | -- | -- |
| 91.91 | 0.447 | 11.4 | -1.61 | 0.48 | 0.967 | -- | -0.634 | -0.602 | 16 | 20.57 | 1376 | -- | -- |
| 92.62 | 0.448 | 11.4 | -1.5 | 0.487 | 1.05 | -- | -- | -0.577 | 15.9 | 20.57 | 1323 | -- | -- |
| 103.26 | 0.473 | 11.4 | -1.63 | -- | 0.975 | -- | -0.652 | -0.617 | -- | 20.63 | 1613 | -- | -- |
| 115.82 | 0.505 | 11.3 | -1.07 | 0.438 | -- | 0.835 | -- | -0.343 | 16.6 | -- | -- | -- | -- |
| 117.54 | 0.508 | 11.3 | -1.06 | 0.443 | -- | -- | -- | -0.338 | 16.2 | -- | -- | -- | -- |
| 104.29 | 0.476 | 11.4 | -1.51 | -- | 1.02 | -- | -- | -0.596 | -- | 20.71 | 1588 | -- | -- |
| 139.8 | 0.551 | 11.3 | -- | 0.498 | 0.415 | -- | -- | -0.35 | 15.7 | 22.3 | 1121 | -- | -- |
| 128.15 | 0.529 | 11.3 | -1.08 | -- | -- | -- | -- | -0.35 | -- | -- | -- | -- | -- |
| 147.39 | 0.568 | 11.3 | -- | 0.463 | -- | -- | -- | -0.22 | 16.1 | -- | -- | -- | -- |
| 151.19 | 0.573 | 11.3 | -- | -- | 0.37 | -- | -- | -0.315 | -- | 22.3 | 341 | -- | -- |
| 159.04 | 0.589 | 11.3 | -- | -- | -- | -- | -- | -0.23 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.38 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 4 | 80.35 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 64 | 86.43 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 70 | 86.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 19 |
| 76 | 87.01 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 77 | 87.07 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 79 | 87.09 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 86 | 87.33 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 137 | 88.55 | temperature | 10 | 90 | > th | dose dependent | sin | 5 | NA |
| 160 | 88.80 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 163 | 88.82 | temperature | 15 | 270 | > th | dose dependent | sin | 7 | NA |
| 189 | 89.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 198 | 89.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 240 | 89.79 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 273 | 89.95 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 286 | 90.01 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 294 | 90.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 303 | 90.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 319 | 90.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 333 | 90.22 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 345 | 90.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 350 | 90.29 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 18 |
| 356 | 90.31 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 20 |
| 359 | 90.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 372 | 90.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 380 | 90.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 393 | 90.44 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 555 | 90.97 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 753 | 91.53 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 772 | 91.58 | wind | 9 | 14400 | > th | dose dependent | sin | 6 | NA |
| 774 | 91.59 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 866 | 91.82 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 924 | 91.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 936 | 92.00 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 976 | 92.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |