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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0267800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.78 (0.0326) R2 : 0.877
β1 : 1.05 (0.12) R2dD : 0.0223 R2D : 0.00671
β2 : 3.55 (0.0799) R2dC : 0.534 R2C : 0.572
β3 : -3.29 (0.103) R2dE : 0.285 R2E : 0.312
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.186 (0.07) R2dN8 : 0.0026 R2N8 : 0.00722
σ : 0.608
deviance : 170.31
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_____
C
peak time of C : 21.4
E
wheather : temperature
threshold : 12.57
memory length : 94
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.28
open length of G : 18.5

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
170.21 0.613 6.78 1.05 3.53 -3.23 -0.406 -0.0352 -0.205 21.5 12.89 84 5.3 18.6
169.7 0.607 6.78 1.05 3.55 -3.29 -0.45 -- -0.191 21.4 12.56 94 5.28 18.6
170.48 0.608 6.78 1.07 3.54 -3.21 -- 0.286 -0.205 21.5 12.64 92 5.28 18.6
170.31 0.608 6.78 1.05 3.55 -3.29 -- -- -0.186 21.4 12.57 94 5.28 18.5
258.94 0.749 6.89 0.431 -- -4.42 -- 0.923 -0.557 -- -30.43 302 3.13 11.2
307.1 0.822 6.84 0.568 4.08 -- -0.12 -- -0.55 23.5 -- -- -- --
307.16 0.821 6.84 0.572 4.08 -- -- -- -0.549 23.5 -- -- -- --
215.65 0.684 6.73 0.818 -- -4.97 -- -- -0.305 -- 5.469 249 3.6 10.8
197.79 0.655 6.81 -- 3.55 -3.1 -- -- -0.313 21.5 10.59 97 5.37 18.4
1350.73 1.72 6.75 0.683 -- -- -- -- -0.505 -- -- -- -- --
315.8 0.831 6.86 -- 4.08 -- -- -- -0.613 23.5 -- -- -- --
234.13 0.713 6.73 -- -- -4.83 -- -- -0.415 -- 4.258 257 3.66 10.7
1363.03 1.72 6.77 -- -- -- -- -- -0.581 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 174.13 temperature 15 90 > th dose dependent rect. 5 19
3 175.60 temperature 15 10 > th dose dependent rect. 6 18
8 181.30 temperature 10 270 > th dose dependent rect. 3 21
38 193.51 temperature 10 270 > th dose dependent rect. 3 10
44 195.13 temperature 15 720 > th dose dependent rect. 4 3
49 196.07 temperature 30 10 < th dose dependent rect. 2 17
50 196.59 temperature 30 10 < th dose dependent rect. 24 19
55 197.22 temperature 15 90 > th dose dependent rect. 5 10
66 198.64 temperature 20 10 > th dose dependent rect. 6 16
76 199.46 temperature 30 90 < th dose dependent rect. 1 16
83 200.23 temperature 20 270 > th dose dependent rect. 4 7
108 202.89 temperature 20 10 > th dose dependent rect. 5 10
151 205.88 temperature 20 10 > th dose dependent sin 1 NA
192 208.65 temperature 20 10 > th dose dependent rect. 6 14
199 208.94 temperature 30 720 < th dose dependent rect. 7 2
213 209.67 temperature 10 10 > th dose dependent sin 1 NA
218 209.88 temperature 25 10 < th dose independent rect. 2 16
251 211.24 temperature 30 720 < th dose dependent rect. 2 9
270 211.88 temperature 20 720 > th dose independent rect. 4 3
290 212.49 temperature 25 10 > th dose dependent rect. 17 23
329 213.77 temperature 30 90 < th dose dependent rect. 9 10
363 214.77 temperature 25 720 < th dose dependent rect. 5 5
366 214.81 temperature 30 10 < th dose dependent sin 1 NA
396 215.58 temperature 30 270 < th dose independent rect. 24 17
415 216.04 temperature 30 270 < th dose dependent rect. 9 8
423 216.20 temperature 25 10 > th dose dependent rect. 1 23
424 216.21 temperature 30 10 < th dose dependent rect. 10 9
496 217.55 temperature 25 10 > th dose dependent no NA NA
501 217.60 temperature 25 10 > th dose dependent rect. 21 23
525 218.00 temperature 25 10 > th dose dependent rect. 23 23
538 218.23 temperature 30 90 < th dose dependent rect. 11 8
581 219.05 temperature 10 720 > th dose dependent sin 5 NA
642 220.26 temperature 25 10 > th dose dependent rect. 19 23
653 220.49 temperature 25 10 > th dose dependent rect. 8 23
655 220.53 temperature 25 10 > th dose independent rect. 5 10
710 221.33 temperature 30 720 < th dose dependent sin 5 NA
746 221.89 temperature 25 10 > th dose dependent rect. 19 21
831 223.33 temperature 25 10 > th dose dependent rect. 15 23
901 224.42 temperature 25 10 > th dose dependent rect. 21 19
953 224.96 temperature 30 10 < th dose independent rect. 11 19
965 225.11 temperature 25 10 > th dose dependent rect. 1 13
990 225.36 temperature 25 10 > th dose dependent rect. 1 15