Os01g0265200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochondrial substrate carrier family protein.
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Os01g0265200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochondrial substrate carrier family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.18 | 0.283 | 12.3 | 0.246 | 1.54 | 1 | 0.00405 | -1.69 | 0.0438 | 18 | 23.79 | 108 | -- | -- |
| 37.41 | 0.285 | 12.3 | 0.482 | 1.57 | 0.845 | -0.233 | -- | 0.108 | 17.9 | 23.38 | 98 | -- | -- |
| 36.13 | 0.28 | 12.3 | 0.253 | 1.54 | 0.984 | -- | -1.57 | 0.0371 | 17.9 | 23.42 | 107 | -- | -- |
| 37.54 | 0.285 | 12.3 | 0.485 | 1.57 | 0.837 | -- | -- | 0.107 | 17.9 | 23.32 | 97 | -- | -- |
| 107.65 | 0.483 | 12.3 | 0.197 | -- | 2.15 | -- | -1.16 | -0.0275 | -- | 24.28 | 310 | -- | -- |
| 49.24 | 0.329 | 12.2 | 0.647 | 1.87 | -- | 0.0213 | -- | 0.225 | 17.5 | -- | -- | -- | -- |
| 49.24 | 0.329 | 12.2 | 0.647 | 1.87 | -- | -- | -- | 0.225 | 17.5 | -- | -- | -- | -- |
| 110.76 | 0.49 | 12.2 | 0.254 | -- | 2.05 | -- | -- | -0.0102 | -- | 24.4 | 323 | -- | -- |
| 43.32 | 0.307 | 12.3 | -- | 1.51 | 0.979 | -- | -- | 0.0394 | 18 | 22.84 | 106 | -- | -- |
| 231.58 | 0.711 | 12.2 | 0.585 | -- | -- | -- | -- | 0.18 | -- | -- | -- | -- | -- |
| 60.27 | 0.363 | 12.2 | -- | 1.86 | -- | -- | -- | 0.153 | 17.5 | -- | -- | -- | -- |
| 112.37 | 0.494 | 12.3 | -- | -- | 2.08 | -- | -- | -0.0483 | -- | 24.3 | 323 | -- | -- |
| 240.61 | 0.724 | 12.2 | -- | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.46 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 7 | 12 |
| 12 | 36.32 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 1 | 18 |
| 18 | 36.50 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 6 | 4 |
| 22 | 36.58 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 7 | 17 |
| 25 | 36.60 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 38 | 36.67 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 53 | 36.73 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 22 |
| 81 | 36.82 | temperature | 25.0 | 90 | > th | dose dependent | no | NA | NA |
| 102 | 36.87 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 103 | 36.89 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 8 | 10 |
| 104 | 36.91 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 10 | 8 |
| 111 | 36.94 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 8 | 10 |
| 112 | 36.94 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 8 | 10 |
| 116 | 36.94 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 168 | 37.08 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 5 |
| 169 | 37.08 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 5 |
| 233 | 37.21 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 310 | 37.37 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 13 |
| 325 | 37.45 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 8 | 11 |
| 343 | 37.49 | radiation | 40.0 | 43200 | > th | dose dependent | sin | 10 | NA |
| 408 | 37.59 | temperature | 10.0 | 270 | > th | dose dependent | sin | 1 | NA |
| 410 | 37.59 | radiation | 10.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 495 | 37.68 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 538 | 37.73 | temperature | 30.0 | 90 | < th | dose dependent | sin | 23 | NA |
| 553 | 37.76 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 554 | 37.76 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 595 | 37.84 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 644 | 37.88 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 14 | 22 |
| 652 | 37.90 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 653 | 37.90 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 655 | 37.90 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 4 | 8 |
| 663 | 37.90 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 690 | 37.93 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 721 | 37.96 | radiation | 40.0 | 43200 | > th | dose dependent | no | NA | NA |
| 722 | 37.96 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 758 | 37.96 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 19 | 13 |
| 902 | 37.98 | radiation | 40.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 903 | 37.98 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 964 | 37.99 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 7 | 1 |