Os01g0264400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0264400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 355.43 | 0.886 | 4.11 | 2.02 | 1.37 | 1.34 | 1.73 | 2.54 | -0.389 | 6.21 | 21.29 | 1099 | -- | -- |
| 359.04 | 0.883 | 4.2 | 1.37 | 1.36 | 1.51 | 1.79 | -- | -0.575 | 6.06 | 22.57 | 1153 | -- | -- |
| 362.21 | 0.886 | 4.12 | 2.05 | 1.32 | 1.3 | -- | 2.5 | -0.394 | 6.07 | 21.4 | 1175 | -- | -- |
| 365.11 | 0.89 | 4.19 | 1.35 | 1.33 | 1.48 | -- | -- | -0.563 | 6.12 | 22.81 | 1173 | -- | -- |
| 448.73 | 0.987 | 4.14 | 2.06 | -- | 1.38 | -- | 2.47 | -0.385 | -- | 21.68 | 1287 | -- | -- |
| 426.84 | 0.969 | 4.13 | 1.82 | 1.4 | -- | 1.78 | -- | -0.266 | 5.37 | -- | -- | -- | -- |
| 434.76 | 0.976 | 4.13 | 1.83 | 1.41 | -- | -- | -- | -0.274 | 5.38 | -- | -- | -- | -- |
| 451.33 | 0.989 | 4.22 | 1.34 | -- | 1.55 | -- | -- | -0.534 | -- | 23.34 | 1283 | -- | -- |
| 409.62 | 0.943 | 4.25 | -- | 1.3 | 1.8 | -- | -- | -0.791 | 6.18 | 22.56 | 1199 | -- | -- |
| 538.4 | 1.08 | 4.15 | 1.87 | -- | -- | -- | -- | -0.239 | -- | -- | -- | -- | -- |
| 522.71 | 1.07 | 4.18 | -- | 1.44 | -- | -- | -- | -0.477 | 5.33 | -- | -- | -- | -- |
| 495.05 | 1.04 | 4.27 | -- | -- | 1.87 | -- | -- | -0.759 | -- | 22.9 | 1291 | -- | -- |
| 631.09 | 1.17 | 4.2 | -- | -- | -- | -- | -- | -0.447 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 348.73 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 2 |
| 2 | 350.32 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 2 |
| 6 | 351.75 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 8 |
| 7 | 351.75 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 25 | 354.22 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 20 |
| 38 | 354.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 19 |
| 47 | 355.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 19 |
| 76 | 356.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 108 | 357.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 118 | 357.22 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 145 | 357.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 159 | 357.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 9 |
| 178 | 357.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 15 |
| 190 | 357.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 247 | 358.20 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 252 | 358.24 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 335 | 358.60 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 420 | 359.06 | temperature | 30 | 1440 | < th | dose dependent | sin | 18 | NA |
| 453 | 359.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 22 |
| 488 | 359.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 22 |
| 497 | 359.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 23 |
| 498 | 359.32 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 511 | 359.37 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 606 | 359.70 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 2 |
| 610 | 359.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 20 |
| 680 | 360.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 755 | 360.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 941 | 360.98 | temperature | 25 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 983 | 361.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 986 | 361.13 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 18 |