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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0263000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase 9 precursor (EC 1.11.1.7) (Atperox P9) (ATP18a).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0112) R2 : 0.00228
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0242 (0.0237) R2dN8 : 0.00295 R2N8 : 0.00228
σ : 0.212
deviance : 20.58
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
19.53 0.208 3.01 0.0743 0.0725 0.136 0.011 0.569 0.00753 7.12 90.24 5915 -- --
19.96 0.208 3 0.054 0.0675 0.158 -0.0177 -- -0.00292 6.91 93.39 7316 -- --
19.53 0.206 3.01 0.0738 0.0725 0.136 -- 0.568 0.00748 7.07 90.01 5916 -- --
19.93 0.208 3.01 0.0452 0.0864 0.152 -- -- -0.0102 6.96 91.08 7911 -- --
19.8 0.207 3.01 0.0735 -- 0.134 -- 0.564 0.00919 -- 89.9 5856 -- --
20.29 0.211 3 0.0275 0.0714 -- 0.000374 -- 0.0261 7.04 -- -- -- --
20.29 0.211 3 0.0275 0.0714 -- -- -- 0.0261 7.04 -- -- -- --
20.21 0.209 3.01 0.0472 -- 0.159 -- -- -0.00556 -- 92 7134 -- --
19.99 0.208 3 -- 0.0843 0.146 -- -- -0.00901 7.21 88 7944 -- --
20.56 0.212 3 0.0289 -- -- -- -- 0.0274 -- -- -- -- --
20.31 0.211 3 -- 0.0717 -- -- -- 0.023 7.01 -- -- -- --
20.27 0.21 3.01 -- -- 0.149 -- -- -0.00897 -- 91.52 7132 -- --
20.58 0.212 3 -- -- -- -- -- 0.0242 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 18.87 atmosphere 1000.0 10 > th dose independent rect. 21 23
5 19.10 temperature 25.0 30 > th dose dependent rect. 20 3
7 19.14 humidity 90.0 10 < th dose dependent rect. 20 1
8 19.16 radiation 1.0 1440 < th dose dependent rect. 21 1
9 19.18 temperature 20.0 10 > th dose independent rect. 20 1
10 19.18 humidity 90.0 10 < th dose independent rect. 20 1
11 19.18 atmosphere 1005.0 10 > th dose independent rect. 20 1
13 19.19 wind 1.0 10 > th dose independent rect. 20 1
14 19.19 wind 5.0 10 < th dose independent rect. 20 1
17 19.19 temperature 10.0 10 > th dose independent rect. 20 1
19 19.19 temperature 30.0 10 < th dose independent rect. 20 1
20 19.19 humidity 50.0 10 > th dose independent rect. 20 1
23 19.19 atmosphere 995.0 10 > th dose independent rect. 20 1
25 19.19 atmosphere 1010.0 10 < th dose independent rect. 20 1
27 19.19 radiation 1.0 10 < th dose independent rect. 20 1
32 19.19 precipitation 0.1 10 < th dose independent rect. 20 1
33 19.19 temperature 10.0 10 > th dose independent rect. 21 23
34 19.19 wind 7.0 10 < th dose dependent rect. 20 1
36 19.19 atmosphere 1010.0 30 < th dose dependent rect. 20 1
37 19.19 radiation 1.0 10 < th dose dependent rect. 20 1
42 19.19 precipitation 0.1 10 < th dose dependent rect. 20 1
44 19.20 temperature 10.0 10 > th dose dependent rect. 20 1
45 19.20 temperature 30.0 30 < th dose dependent rect. 20 1
46 19.20 atmosphere 995.0 10 > th dose dependent rect. 20 1
85 19.22 wind 1.0 10 > th dose dependent rect. 20 1
89 19.22 humidity 50.0 10 > th dose dependent rect. 20 1
94 19.23 temperature 10.0 1440 > th dose independent rect. 21 1
97 19.23 temperature 30.0 1440 < th dose independent rect. 21 1
101 19.23 humidity 50.0 1440 > th dose independent rect. 21 1
107 19.23 atmosphere 995.0 1440 > th dose independent rect. 21 1
108 19.23 radiation 1.0 1440 < th dose independent rect. 21 1
128 19.23 temperature 10.0 1440 > th dose independent rect. 22 23
131 19.23 precipitation 0.1 10 < th dose independent rect. 21 23
144 19.23 precipitation 0.1 10 < th dose dependent rect. 21 23
174 19.27 atmosphere 1005.0 10 > th dose dependent rect. 2 2
181 19.30 atmosphere 1000.0 90 > th dose independent rect. 3 23
184 19.33 humidity 90.0 90 < th dose independent rect. 2 2
185 19.34 humidity 50.0 30 > th dose independent rect. 21 23
188 19.37 wind 9.0 30 < th dose independent rect. 21 23
203 19.43 wind 1.0 30 < th dose dependent rect. 2 1
204 19.43 humidity 90.0 90 < th dose dependent rect. 2 1
206 19.44 precipitation 0.1 1440 < th dose independent rect. 21 1
211 19.44 precipitation 0.1 1440 < th dose dependent rect. 21 1
213 19.44 atmosphere 1005.0 10 > th dose dependent rect. 20 3
214 19.45 wind 1.0 10 < th dose independent rect. 2 1
219 19.45 humidity 80.0 14400 < th dose dependent rect. 4 5
221 19.46 atmosphere 1010.0 30 < th dose dependent rect. 2 1
227 19.47 humidity 70.0 14400 > th dose independent rect. 4 6
229 19.47 humidity 70.0 14400 > th dose independent rect. 1 9
244 19.48 humidity 70.0 14400 > th dose independent rect. 7 3
251 19.48 humidity 90.0 10 < th dose dependent rect. 3 1
259 19.49 humidity 70.0 14400 < th dose independent rect. 8 2
273 19.49 wind 9.0 10 < th dose independent rect. 3 23
282 19.49 humidity 80.0 14400 < th dose dependent rect. 1 9
300 19.51 wind 1.0 30 > th dose independent rect. 21 23
310 19.52 temperature 10.0 10 > th dose independent rect. 2 1
312 19.52 temperature 25.0 10 < th dose independent rect. 2 1
314 19.52 humidity 50.0 10 > th dose independent rect. 2 1
318 19.52 atmosphere 995.0 10 > th dose independent rect. 2 1
320 19.52 atmosphere 1010.0 10 < th dose independent rect. 2 1
322 19.52 radiation 1.0 10 < th dose independent rect. 2 1
327 19.52 precipitation 0.1 10 < th dose independent rect. 2 1
328 19.52 atmosphere 1000.0 10 > th dose independent rect. 23 21
329 19.52 temperature 10.0 10 > th dose independent rect. 3 23
332 19.52 radiation 1.0 10 < th dose dependent rect. 2 1
337 19.52 precipitation 0.1 10 < th dose dependent rect. 2 1
346 19.53 temperature 10.0 10 > th dose dependent rect. 2 1
349 19.53 temperature 30.0 30 < th dose dependent rect. 2 1
350 19.53 humidity 50.0 10 > th dose dependent rect. 2 1
402 19.55 wind 1.0 30 < th dose independent rect. 10 1
404 19.55 temperature 10.0 1440 > th dose independent rect. 11 1
410 19.55 atmosphere 995.0 1440 > th dose independent rect. 11 1
413 19.55 precipitation 0.1 1440 < th dose independent rect. 11 1
420 19.55 atmosphere 995.0 720 > th dose independent rect. 7 8
421 19.55 radiation 30.0 270 > th dose independent rect. 14 19
423 19.55 temperature 10.0 1440 > th dose independent rect. 12 23
427 19.55 wind 1.0 30 < th dose dependent rect. 10 1
432 19.55 precipitation 0.1 1440 < th dose dependent rect. 11 1
444 19.55 atmosphere 995.0 30 > th dose dependent rect. 21 23
449 19.56 atmosphere 1000.0 10 > th dose independent rect. 14 12
451 19.56 atmosphere 1000.0 720 > th dose independent rect. 21 12
459 19.56 humidity 80.0 4320 > th dose dependent rect. 7 2
466 19.57 humidity 60.0 14400 < th dose independent rect. 11 1
475 19.57 atmosphere 995.0 720 > th dose independent rect. 3 23
483 19.57 humidity 70.0 4320 > th dose dependent rect. 3 7
502 19.58 atmosphere 995.0 720 > th dose independent rect. 23 16
518 19.59 wind 1.0 30 > th dose independent rect. 2 1
520 19.59 humidity 70.0 4320 > th dose independent rect. 10 1
531 19.59 temperature 30.0 270 < th dose independent rect. 10 11
532 19.59 humidity 90.0 90 < th dose independent rect. 1 20
533 19.59 temperature 30.0 30 < th dose independent rect. 21 23
534 19.59 humidity 80.0 14400 < th dose dependent sin 8 NA
535 19.59 wind 1.0 14400 < th dose dependent rect. 6 1
566 19.60 atmosphere 995.0 1440 > th dose independent rect. 3 12
568 19.60 atmosphere 995.0 720 > th dose independent rect. 15 23
571 19.60 humidity 50.0 14400 > th dose dependent rect. 7 2
638 19.62 wind 3.0 14400 > th dose independent rect. 19 1
676 19.62 atmosphere 995.0 10 > th dose dependent rect. 23 21
682 19.63 wind 1.0 14400 < th dose independent rect. 4 3
691 19.63 humidity 70.0 4320 > th dose independent rect. 8 7
696 19.63 humidity 70.0 4320 > th dose independent rect. 8 9
698 19.63 humidity 70.0 4320 < th dose independent rect. 8 9
706 19.63 humidity 60.0 10 > th dose independent rect. 14 12
708 19.63 radiation 40.0 30 < th dose independent rect. 14 12
720 19.63 humidity 60.0 14400 < th dose independent rect. 19 18
732 19.63 humidity 50.0 4320 > th dose dependent rect. 11 2
757 19.64 humidity 70.0 4320 > th dose independent sin 1 NA
763 19.64 humidity 70.0 30 < th dose independent rect. 10 1
764 19.64 atmosphere 1010.0 30 < th dose independent rect. 10 1
768 19.64 wind 1.0 14400 > th dose independent rect. 4 3
823 19.64 atmosphere 1000.0 10 > th dose independent rect. 2 12
836 19.64 atmosphere 1000.0 720 > th dose independent rect. 21 14
873 19.64 humidity 50.0 4320 > th dose dependent sin 4 NA
881 19.64 humidity 80.0 4320 < th dose dependent rect. 12 1
882 19.64 humidity 60.0 14400 < th dose dependent rect. 12 1
889 19.64 wind 1.0 14400 < th dose dependent rect. 4 3
928 19.64 humidity 90.0 4320 < th dose dependent rect. 3 13
943 19.65 humidity 70.0 4320 < th dose independent sin 1 NA
946 19.65 atmosphere 995.0 720 > th dose independent rect. 14 1
947 19.65 radiation 40.0 30 < th dose independent rect. 10 1
969 19.65 precipitation 0.1 720 < th dose independent rect. 9 8
996 19.65 precipitation 0.1 720 < th dose independent rect. 15 16