Os01g0262500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TRAM, LAG1 and CLN8 homology domain containing protein.
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Os01g0262500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TRAM, LAG1 and CLN8 homology domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 170.07 | 0.613 | 7.18 | -0.0578 | 3.04 | -1.26 | -1.51 | 0.745 | 0.238 | 8.83 | 90.08 | 35 | -- | -- |
| 171.08 | 0.609 | 7.19 | -0.0295 | 3.03 | -1.19 | -1.65 | -- | 0.252 | 8.82 | 89.51 | 33 | -- | -- |
| 177.27 | 0.62 | 7.18 | -0.111 | 3.05 | -1.33 | -- | 1.1 | 0.225 | 8.84 | 90.59 | 34 | -- | -- |
| 179.91 | 0.625 | 7.19 | -0.0799 | 3.04 | -1.23 | -- | -- | 0.248 | 8.83 | 90.28 | 34 | -- | -- |
| 664.09 | 1.21 | 7.25 | -0.198 | -- | -1.11 | -- | 0.317 | 0.366 | -- | 74.49 | 4 | -- | -- |
| 208.57 | 0.677 | 7.14 | -0.175 | 2.97 | -- | -1.53 | -- | 0.478 | 9.54 | -- | -- | -- | -- |
| 217.23 | 0.69 | 7.14 | -0.231 | 2.98 | -- | -- | -- | 0.476 | 9.56 | -- | -- | -- | -- |
| 663.83 | 1.21 | 7.25 | -0.195 | -- | -1.1 | -- | -- | 0.374 | -- | 73 | 2 | -- | -- |
| 180.09 | 0.625 | 7.19 | -- | 3.05 | -1.25 | -- | -- | 0.255 | 8.83 | 90.32 | 34 | -- | -- |
| 741.03 | 1.27 | 7.22 | -0.253 | -- | -- | -- | -- | 0.483 | -- | -- | -- | -- | -- |
| 218.63 | 0.692 | 7.14 | -- | 2.98 | -- | -- | -- | 0.502 | 9.57 | -- | -- | -- | -- |
| 664.82 | 1.2 | 7.24 | -- | -- | -1.1 | -- | -- | 0.395 | -- | 73 | 2 | -- | -- |
| 742.72 | 1.27 | 7.22 | -- | -- | -- | -- | -- | 0.511 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 166.79 | humidity | 90 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 2 | 167.19 | humidity | 90 | 30 | > th | dose dependent | sin | 8 | NA |
| 11 | 168.46 | humidity | 90 | 10 | < th | dose independent | rect. | 21 | 11 |
| 14 | 168.87 | humidity | 60 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 16 | 169.00 | humidity | 90 | 30 | > th | dose independent | sin | 7 | NA |
| 18 | 169.10 | humidity | 90 | 30 | > th | dose dependent | rect. | 22 | 20 |
| 35 | 169.50 | humidity | 90 | 10 | > th | dose dependent | rect. | 24 | 12 |
| 43 | 169.62 | humidity | 90 | 30 | > th | dose dependent | rect. | 22 | 14 |
| 69 | 169.82 | humidity | 90 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 78 | 170.05 | humidity | 90 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 80 | 170.06 | humidity | 90 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 87 | 170.09 | humidity | 90 | 10 | > th | dose dependent | rect. | 24 | 10 |
| 89 | 170.10 | humidity | 90 | 30 | > th | dose dependent | no | NA | NA |
| 90 | 170.10 | humidity | 90 | 30 | > th | dose dependent | rect. | 17 | 21 |
| 93 | 170.10 | humidity | 90 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 94 | 170.10 | humidity | 90 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 100 | 170.12 | humidity | 90 | 30 | > th | dose dependent | rect. | 17 | 19 |
| 114 | 170.17 | humidity | 90 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 118 | 170.22 | humidity | 90 | 270 | > th | dose dependent | rect. | 23 | 4 |
| 127 | 170.25 | humidity | 90 | 10 | > th | dose dependent | rect. | 24 | 8 |
| 156 | 170.48 | humidity | 90 | 720 | > th | dose dependent | rect. | 17 | 11 |
| 162 | 170.51 | humidity | 90 | 30 | > th | dose dependent | rect. | 11 | 21 |
| 255 | 171.22 | humidity | 90 | 10 | < th | dose dependent | rect. | 21 | 11 |
| 256 | 171.22 | humidity | 90 | 30 | > th | dose dependent | rect. | 17 | 15 |
| 313 | 171.74 | humidity | 90 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 429 | 172.54 | humidity | 90 | 10 | < th | dose independent | sin | 7 | NA |
| 565 | 173.39 | humidity | 90 | 10 | < th | dose independent | rect. | 2 | 6 |
| 588 | 173.54 | humidity | 90 | 270 | > th | dose dependent | rect. | 1 | 1 |
| 606 | 173.70 | humidity | 90 | 10 | > th | dose independent | rect. | 24 | 7 |
| 607 | 173.70 | humidity | 90 | 10 | > th | dose independent | rect. | 24 | 12 |
| 620 | 173.78 | humidity | 90 | 30 | > th | dose independent | rect. | 22 | 14 |
| 627 | 173.84 | humidity | 90 | 30 | > th | dose independent | rect. | 22 | 20 |
| 632 | 173.90 | humidity | 90 | 30 | > th | dose independent | rect. | 22 | 9 |
| 883 | 175.56 | humidity | 90 | 720 | > th | dose dependent | sin | 16 | NA |
| 926 | 175.89 | humidity | 90 | 720 | > th | dose independent | rect. | 19 | 9 |
| 927 | 175.89 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 8 | 22 |
| 945 | 176.01 | humidity | 90 | 720 | > th | dose independent | rect. | 21 | 6 |
| 946 | 176.03 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 7 | 23 |
| 953 | 176.08 | humidity | 90 | 720 | > th | dose independent | rect. | 9 | 19 |