Os01g0260800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0260800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.67 | 0.3 | 11.3 | -1.24 | 0.677 | 0.709 | -0.285 | -3.82 | -0.585 | 11.9 | 25.83 | 1529 | -- | -- |
| 50.25 | 0.33 | 11.1 | -0.336 | 0.702 | 0.606 | -0.159 | -- | -0.289 | 12.2 | 21.3 | 5324 | -- | -- |
| 41.02 | 0.298 | 11.3 | -1.23 | 0.678 | 0.707 | -- | -3.77 | -0.582 | 11.9 | 25.83 | 1531 | -- | -- |
| 47.89 | 0.322 | 11.1 | -0.62 | 0.714 | 0.729 | -- | -- | -0.353 | 12.1 | 18.99 | 26686 | -- | -- |
| 63.32 | 0.373 | 11.2 | -0.343 | -- | 0.512 | -- | -1.37 | -0.237 | -- | 27.2 | 1560 | -- | -- |
| 58.02 | 0.357 | 11.1 | 0.0565 | 0.666 | -- | -0.179 | -- | -0.0789 | 12 | -- | -- | -- | -- |
| 58.16 | 0.357 | 11.1 | 0.0494 | 0.666 | -- | -- | -- | -0.0797 | 12 | -- | -- | -- | -- |
| 67.77 | 0.385 | 11.1 | -0.0799 | -- | 0.454 | -- | -- | -0.163 | -- | 27.2 | 1560 | -- | -- |
| 52.58 | 0.338 | 11.1 | -- | 0.682 | 0.462 | -- | -- | -0.15 | 12.1 | 18.6 | 5015 | -- | -- |
| 86.12 | 0.434 | 11.1 | 0.0284 | -- | -- | -- | -- | -0.0892 | -- | -- | -- | -- | -- |
| 58.23 | 0.357 | 11.1 | -- | 0.666 | -- | -- | -- | -0.0852 | 12 | -- | -- | -- | -- |
| 67.93 | 0.385 | 11.1 | -- | -- | 0.448 | -- | -- | -0.153 | -- | 27.2 | 1560 | -- | -- |
| 86.14 | 0.433 | 11.1 | -- | -- | -- | -- | -- | -0.0923 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.07 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 3 | 41.08 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 13 | 41.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 7 |
| 46 | 41.27 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 14 |
| 141 | 41.55 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 15 |
| 217 | 41.66 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 220 | 41.66 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 242 | 41.71 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 280 | 41.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 300 | 41.92 | humidity | 60 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 303 | 41.93 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 305 | 41.94 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 323 | 41.99 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 353 | 42.09 | humidity | 60 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 371 | 42.13 | radiation | 10 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 399 | 42.19 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 402 | 42.20 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 407 | 42.20 | humidity | 60 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 414 | 42.22 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 453 | 42.30 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 454 | 42.30 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 456 | 42.31 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 468 | 42.32 | humidity | 60 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 471 | 42.32 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 17 |
| 480 | 42.34 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 492 | 42.36 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 521 | 42.41 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 528 | 42.42 | radiation | 1 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 546 | 42.44 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 570 | 42.45 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 599 | 42.48 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 602 | 42.49 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 604 | 42.49 | humidity | 60 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 616 | 42.50 | radiation | 1 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 644 | 42.53 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 22 |
| 649 | 42.54 | humidity | 90 | 43200 | > th | dose dependent | rect. | 1 | 11 |
| 656 | 42.55 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 678 | 42.57 | radiation | 30 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 682 | 42.57 | humidity | 90 | 43200 | > th | dose dependent | sin | 6 | NA |
| 696 | 42.59 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 722 | 42.60 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 726 | 42.60 | radiation | 30 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 774 | 42.61 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 775 | 42.61 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 856 | 42.66 | radiation | 40 | 43200 | > th | dose dependent | sin | 10 | NA |
| 873 | 42.67 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 915 | 42.69 | radiation | 10 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 981 | 42.71 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |