Os01g0260500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0260500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Disease resistance protein family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.11 | 0.308 | 8.6 | 0.196 | 1.03 | 0.0192 | -0.0945 | -1.5 | -0.0879 | 20.8 | 1015 | 4402 | -- | -- |
| 46.38 | 0.317 | 8.61 | 0.0692 | 1.02 | 0.233 | -0.183 | -- | -0.103 | 20.8 | 1016 | 5833 | -- | -- |
| 43.14 | 0.306 | 8.6 | 0.201 | 1.03 | 0.0222 | -- | -1.5 | -0.0876 | 20.8 | 1015 | 4401 | -- | -- |
| 45.28 | 0.313 | 8.62 | 0.118 | 1.01 | 0.503 | -- | -- | -0.106 | 20.8 | 1017 | 4309 | -- | -- |
| 102.87 | 0.472 | 8.57 | 0.219 | -- | 0.0538 | -- | -1.36 | -0.0821 | -- | 1015 | 4565 | -- | -- |
| 47.6 | 0.323 | 8.62 | 0.00052 | 1.03 | -- | -0.151 | -- | -0.135 | 20.8 | -- | -- | -- | -- |
| 47.68 | 0.323 | 8.62 | 0.00545 | 1.03 | -- | -- | -- | -0.135 | 20.8 | -- | -- | -- | -- |
| 104.63 | 0.476 | 8.59 | 0.125 | -- | 0.546 | -- | -- | -0.0862 | -- | 1018 | 4421 | -- | -- |
| 45.56 | 0.314 | 8.62 | -- | 1.02 | 0.447 | -- | -- | -0.121 | 20.8 | 1017 | 4304 | -- | -- |
| 107.48 | 0.484 | 8.59 | 0.00408 | -- | -- | -- | -- | -0.144 | -- | -- | -- | -- | -- |
| 47.68 | 0.323 | 8.62 | -- | 1.03 | -- | -- | -- | -0.136 | 20.8 | -- | -- | -- | -- |
| 104.93 | 0.477 | 8.59 | -- | -- | 0.467 | -- | -- | -0.128 | -- | 1018 | 4429 | -- | -- |
| 107.48 | 0.484 | 8.59 | -- | -- | -- | -- | -- | -0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.57 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 5 |
| 2 | 40.77 | humidity | 90 | 30 | < th | dose independent | rect. | 2 | 4 |
| 4 | 41.01 | temperature | 20 | 90 | < th | dose independent | rect. | 3 | 2 |
| 6 | 41.06 | temperature | 20 | 90 | < th | dose dependent | rect. | 1 | 5 |
| 9 | 41.20 | temperature | 20 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 20 | 41.56 | temperature | 20 | 10 | < th | dose independent | rect. | 1 | 5 |
| 22 | 41.58 | humidity | 90 | 10 | < th | dose dependent | rect. | 2 | 4 |
| 65 | 42.06 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 77 | 42.24 | humidity | 80 | 270 | < th | dose independent | rect. | 23 | 5 |
| 82 | 42.25 | humidity | 80 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 97 | 42.33 | radiation | 10 | 4320 | < th | dose dependent | rect. | 12 | 4 |
| 106 | 42.41 | humidity | 90 | 270 | < th | dose dependent | rect. | 1 | 3 |
| 109 | 42.43 | humidity | 70 | 10 | > th | dose dependent | rect. | 11 | 16 |
| 116 | 42.46 | humidity | 80 | 270 | < th | dose independent | rect. | 1 | 2 |
| 139 | 42.52 | humidity | 80 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 162 | 42.62 | wind | 7 | 1440 | < th | dose independent | rect. | 24 | 10 |
| 169 | 42.64 | radiation | 10 | 4320 | < th | dose dependent | rect. | 12 | 1 |
| 194 | 42.71 | wind | 7 | 1440 | > th | dose independent | rect. | 24 | 10 |
| 203 | 42.73 | wind | 7 | 1440 | > th | dose independent | rect. | 21 | 13 |
| 215 | 42.77 | radiation | 10 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 252 | 42.85 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 272 | 42.91 | humidity | 80 | 1440 | < th | dose independent | rect. | 21 | 17 |
| 301 | 42.98 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 20 |
| 308 | 42.99 | humidity | 80 | 720 | > th | dose independent | rect. | 20 | 20 |
| 313 | 43.00 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 322 | 43.01 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 21 |
| 323 | 43.02 | radiation | 1 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 324 | 43.02 | radiation | 1 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 326 | 43.02 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 22 |
| 352 | 43.08 | humidity | 80 | 720 | < th | dose independent | rect. | 17 | 21 |
| 358 | 43.09 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 4 | 18 |
| 373 | 43.11 | humidity | 90 | 10 | < th | dose independent | rect. | 14 | 16 |
| 387 | 43.11 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 19 | 20 |
| 393 | 43.12 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 420 | 43.14 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 6 | 14 |
| 421 | 43.14 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 6 | 15 |
| 462 | 43.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 484 | 43.17 | atmosphere | 1015 | 4320 | > th | dose dependent | no | NA | NA |
| 516 | 43.19 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 0 | NA |
| 540 | 43.21 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 541 | 43.21 | radiation | 10 | 4320 | > th | dose independent | rect. | 12 | 4 |
| 556 | 43.22 | atmosphere | 1015 | 4320 | > th | dose independent | sin | 23 | NA |
| 563 | 43.22 | wind | 5 | 1440 | > th | dose dependent | rect. | 21 | 13 |
| 578 | 43.23 | atmosphere | 1015 | 4320 | < th | dose independent | sin | 22 | NA |
| 604 | 43.24 | wind | 7 | 1440 | > th | dose dependent | rect. | 24 | 10 |
| 668 | 43.28 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 672 | 43.28 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 15 |
| 722 | 43.30 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 3 | 3 |
| 730 | 43.30 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 9 | NA |
| 741 | 43.31 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 9 | 8 |
| 808 | 43.34 | wind | 5 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 817 | 43.35 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 821 | 43.35 | temperature | 25 | 10 | < th | dose independent | rect. | 7 | 20 |
| 850 | 43.37 | humidity | 80 | 720 | < th | dose independent | rect. | 17 | 13 |
| 893 | 43.39 | humidity | 80 | 720 | > th | dose independent | rect. | 4 | 23 |
| 906 | 43.40 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 920 | 43.40 | humidity | 80 | 720 | < th | dose dependent | rect. | 21 | 6 |
| 921 | 43.40 | humidity | 80 | 720 | < th | dose dependent | rect. | 20 | 8 |
| 948 | 43.42 | radiation | 1 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 969 | 43.42 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 7 |