Os01g0260000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os01g0260000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 128.35 | 0.532 | 4.36 | 1.68 | 2.49 | 1.66 | 2.32 | -0.748 | 0.274 | 18.4 | 25.9 | 227 | -- | -- |
| 129.13 | 0.529 | 4.36 | 1.6 | 2.48 | 1.74 | 2.34 | -- | 0.259 | 18.3 | 25.7 | 213 | -- | -- |
| 139.5 | 0.55 | 4.3 | 1.93 | 2.53 | 1.52 | -- | -2.38 | 0.365 | 18.4 | 26.29 | 324 | -- | -- |
| 143.78 | 0.558 | 4.36 | 1.57 | 2.5 | 1.77 | -- | -- | 0.272 | 18.2 | 25.8 | 198 | -- | -- |
| 408.01 | 0.941 | 4.25 | 2.07 | -- | 1.51 | -- | -2.47 | 0.345 | -- | 27.7 | 1334 | -- | -- |
| 171.96 | 0.615 | 4.45 | 1.12 | 2.24 | -- | 2.56 | -- | -0.121 | 18.7 | -- | -- | -- | -- |
| 188.34 | 0.643 | 4.45 | 1.09 | 2.25 | -- | -- | -- | -0.113 | 18.6 | -- | -- | -- | -- |
| 412.15 | 0.946 | 4.32 | 1.54 | -- | 1.68 | -- | -- | 0.208 | -- | 25.8 | 1366 | -- | -- |
| 198.44 | 0.656 | 4.43 | -- | 2.36 | 1.14 | -- | -- | -0.0231 | 18.3 | 25.8 | 99 | -- | -- |
| 452.39 | 0.994 | 4.4 | 1.03 | -- | -- | -- | -- | -0.159 | -- | -- | -- | -- | -- |
| 219.41 | 0.693 | 4.48 | -- | 2.24 | -- | -- | -- | -0.234 | 18.6 | -- | -- | -- | -- |
| 464.95 | 1.01 | 4.4 | -- | -- | 0.983 | -- | -- | -0.155 | -- | 23.52 | 3 | -- | -- |
| 480.44 | 1.02 | 4.43 | -- | -- | -- | -- | -- | -0.273 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 127.58 | temperature | 25 | 270 | < th | dose dependent | rect. | 20 | 22 |
| 16 | 129.37 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 17 | 129.39 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 19 | 129.43 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 28 | 129.67 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 34 | 129.87 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 41 | 130.01 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 92 | 131.38 | temperature | 15 | 30 | > th | dose dependent | sin | 7 | NA |
| 174 | 132.66 | temperature | 25 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 364 | 134.62 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 367 | 134.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 22 |
| 493 | 135.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 5 |
| 686 | 135.95 | temperature | 25 | 1440 | < th | dose dependent | sin | 2 | NA |
| 760 | 136.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 908 | 136.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 921 | 136.34 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |